View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12952_low_2 (Length: 921)

Name: NF12952_low_2
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12952_low_2
NF12952_low_2
[»] chr8 (10 HSPs)
chr8 (18-911)||(7100183-7101080)
chr8 (227-710)||(7086780-7087263)
chr8 (312-702)||(7069799-7070189)
chr8 (719-788)||(7087320-7087389)
chr8 (386-522)||(7078397-7078533)
chr8 (220-295)||(7078231-7078306)
chr8 (376-529)||(7021085-7021238)
chr8 (426-522)||(7028695-7028791)
chr8 (426-522)||(7035397-7035493)
chr8 (718-799)||(7070253-7070331)
[»] chr4 (12 HSPs)
chr4 (391-530)||(3953034-3953173)
chr4 (375-507)||(4220718-4220850)
chr4 (391-507)||(3821496-3821612)
chr4 (392-528)||(4003233-4003369)
chr4 (392-507)||(4011712-4011827)
chr4 (376-552)||(3915970-3916146)
chr4 (376-507)||(3811908-3812039)
chr4 (392-507)||(4026469-4026584)
chr4 (413-507)||(4019530-4019624)
chr4 (440-537)||(3988170-3988267)
chr4 (409-481)||(3805802-3805874)
chr4 (444-507)||(3825804-3825867)
[»] chr5 (1 HSPs)
chr5 (391-537)||(13399073-13399219)
[»] chr6 (1 HSPs)
chr6 (457-494)||(12782174-12782211)


Alignment Details
Target: chr8 (Bit Score: 756; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 756; E-Value: 0
Query Start/End: Original strand, 18 - 911
Target Start/End: Original strand, 7100183 - 7101080
Alignment:
Q  18 atcttcactttcaacaacccaaaatcatagtttctggaaaattcctcagctatctcatttagtactcatgatacacacttgaaagatttgtttcacatag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7100183 atcttcactttcaacaacccaaaatcatagtttctggaaaattcctcagctatctcatttagtactcatgatacacacttgaaagatttgtttcacatag 7100282  T
Q  118 atggggccacttattatgaattcaacatgaaaagtgaaacaaataataaggcaaccaaaacctatatatatgtagagcaatccaaagacaatgataaata 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  7100283 atggggccacttattatgaattcaacatgaaaagtgaaacaaataataaggcaaccaaaacctatatacatgtagagcaatccagagacaatgataaata 7100382  T
Q  218 gagtaaaacaaaacttacaaaaattgtgatgaatgaaagcctgagatatctgcagatttcttcaaagcagatctccactgtttcaccctaattgaattgt 317  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7100383 gagtaaaacaaaacttacaaaaattgtgatgaatgaaaaccagagatatctgcagatttcttcaaagcagatctccactgtttcaccctacttgaattgt 7100482  T
Q  318 actttttgtcatgttcgacaaattcatctgcataagttcccttctgatgcctcacaattgtaggatcaactttgtagaaaacaggcaataaaatctgtcc 417  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7100483 actttttgtcatgttcaacaaattcatttgcataagttcccttctgatgcctcacaattgtaggatcaactttgtagaaaacaggcaataaaatatgtcc 7100582  T
Q  418 atctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaatcaaggatgtt 517  Q
    ||||||||| |||||||||||||||||||| |  |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7100583 atctttctccctacactcaacaattttgactaactcatccaaacaccacgacgaagaagcatagttttgagagaatatgaccaaagaaatcaacgatgtt 7100682  T
Q  518 tcaatagcttcaagaagtgattctgctatttcatcaccttttctaagcttattgtctacaaagaaaacaattttctttcgagatagagcttcaaccaaat 617  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7100683 tcaatagtttcaagaagtgattgtgctatttcatcaccttttctaagcttattgtctacaaagaaaacaattttctttcgagataaagcttcaaccaaat 7100782  T
Q  618 ggctaagaaaaccttcacggatatctagacctctaaagctaacaaaaacatcatgcttg--tcactttgaggaacagaacattgaaattccgatgtcaaa 715  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||  |||| |||||||||| |||||||||||||||||||||||    
T  7100783 ggctaagaaaaccttcaaggatatctagacctctaaagctaacaaagacatcatacttgtctcacgttgaggaacaaaacattgaaattccgatgtcaaa 7100882  T
Q  716 ctgataaacaagagataaacaaaaaatacaagattattattgtgcattgtggttcttcctttgtctctctactatacataagataagatgatataattaa 815  Q
    | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  7100883 cagatacacaagagataaacaaaaaatacaagattattattgtgcattgtggttcttcctttgtctctctactctacataagataagatgatatagttaa 7100982  T
Q  816 ttcatgtcaaacagccatatttgactactattgcttccataaattttcccaccaattggaccactttg--tatatgtagagacagaatattcttggac 911  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||    
T  7100983 ttcatgtcaaacagctatatttgactactattgcttccataaattttcccaccaattggaccactttgtatatatatagagacagaatattattggac 7101080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 227 - 710
Target Start/End: Original strand, 7086780 - 7087263
Alignment:
Q  227 aaaacttacaaaaattgtgatgaatgaaagcctgagatatctgcagatttcttcaaagcagatctccactgtttcaccctaattgaattgtactttttgt 326  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    |||||||||||||||| |  |  ||||||||||||  |    
T  7086780 aaaacttacaaaaattgtgatgaatgaaaccctgagatatctgcagatttcttcaaagagcttctccactgtttcaccttgttcaaattgtacttttgtt 7086879  T
Q  327 catgttcgacaaattcatctgcataagttcccttctgatgcctcacaattgtaggatcaactttgtagaaaacaggcaataaaatctgtccatctttctc 426  Q
    |||||||  ||||| ||| ||||||||| ||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  7086880 catgttctgcaaatgcatttgcataagtccccttctgatgcctcacaactgtagggtcaactttgtaaaaaacaggcaataaaatctgtccatctttctc 7086979  T
Q  427 tctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaatcaaggatgtttcaatagct 526  Q
    |||||||||||||||||||||||| ||||||||||||||   |||||||||||||||||||||||||||||| || |||||  | |||||||||||||||    
T  7086980 tctacactcaacaattttgacaagctcatccaaacaccattttgaagaagcatagttttgagagaatatgactaatgaaattgaagatgtttcaatagct 7087079  T
Q  527 tcaagaagtgattctgctatttcatcaccttttctaagcttattgtctacaaagaaaacaattttctttcgagatagagcttcaaccaaatggctaagaa 626  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||    
T  7087080 tcaaaaagtgattgtgctatttcatcaccttttctaagcttattgtctacaaagaaaacaatttcctttcgagataaagcttcaaccaaatgactaagaa 7087179  T
Q  627 aaccttcacggatatctagacctctaaagctaacaaaaacatcatgcttgtcactttgaggaacagaacattgaaattccgatg 710  Q
    ||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  7087180 aaccttcacggatgtccagacctctaaagctaacaaagacatcatgcttgtcactttgaggaactgaacattgaaattccgatg 7087263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 312 - 702
Target Start/End: Original strand, 7069799 - 7070189
Alignment:
Q  312 aattgtactttttgtcatgttcgacaaattcatctgcataagttcccttctgatgcctcacaattgtaggatcaactttgtagaaaacaggcaataaaat 411  Q
    ||||||||||||  |||||||| |||||| |||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7069799 aattgtacttttgttcatgttcaacaaatgcatctgcataagttccattttgatgcctcacaattgtgggatcaactttgtagaaaacaggcaataaaat 7069898  T
Q  412 ctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaatcaag 511  Q
     | |||||||||||||||||| ||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || |||||  |     
T  7069899 gtttccatctttctctctacagtcaacaactttgaccagctcatccaaacaccaagatgaagaagcatagttttgagagaatatgactaatgaaattgaa 7069998  T
Q  512 gatgtttcaatagcttcaagaagtgattctgctatttcatcaccttttctaagcttattgtctacaaagaaaacaattttctttcgagatagagcttcaa 611  Q
    ||||||||||| ||||||| |||||| | || ||||||||  |||||| ||||||||| |||||||||| |||||||||||||| |||| | ||||| ||    
T  7069999 gatgtttcaattgcttcaaaaagtgactgtgatatttcatttccttttgtaagcttatagtctacaaagtaaacaattttcttttgagaaaaagctttaa 7070098  T
Q  612 ccaaatggctaagaaaaccttcacggatatctagacctctaaagctaacaaaaacatcatgcttgtcactttgaggaacagaacattgaaa 702  Q
     ||||||   ||||||| |||||||||||||| |||| | |||||||||||| ||||||| ||||| | |||||||||||||| |||||||    
T  7070099 tcaaatgaggaagaaaaacttcacggatatctggaccccgaaagctaacaaagacatcatacttgtgaatttgaggaacagaagattgaaa 7070189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 719 - 788
Target Start/End: Original strand, 7087320 - 7087389
Alignment:
Q  719 ataaacaagagataaacaaaaaatacaagattattattgtgcattgtggttcttcctttgtctctctact 788  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||    
T  7087320 ataaacaagagacaaacaaaaaatacaagattaatattgtgcattgtggatcttcctttgtgtctctact 7087389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 386 - 522
Target Start/End: Original strand, 7078397 - 7078533
Alignment:
Q  386 actttgtagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagtttt 485  Q
    |||| ||||||||| |||| || ||||   |||| ||| |||||||||||||| ||||| ||||| || |||| ||||||| ||||||| ||| |||||     
T  7078397 acttggtagaaaactggcattagaatcctaccatatttttctctacactcaactattttcacaagctcctccatacaccaatatgaagatgcaaagtttg 7078496  T
Q  486 gagagaatatgaccaaagaaatcaaggatgtttcaat 522  Q
    |||||||||| ||||| ||||| || ||| |||||||    
T  7078497 gagagaatataaccaatgaaatgaatgatttttcaat 7078533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 220 - 295
Target Start/End: Original strand, 7078231 - 7078306
Alignment:
Q  220 gtaaaacaaaacttacaaaaattgtgatgaatgaaagcctgagatatctgcagatttcttcaaagcagatctccac 295  Q
    |||||| || |||||| ||||||||||||||| ||| || || |||| |||||||| |||||||||||||||||||    
T  7078231 gtaaaagaacacttacgaaaattgtgatgaatcaaatccagaaatatttgcagattgcttcaaagcagatctccac 7078306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 376 - 529
Target Start/End: Complemental strand, 7021238 - 7021085
Alignment:
Q  376 tgtaggatcaactttgtagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaa 475  Q
    ||||||||| |||| ||||||||| ||||||| ||||    ||| |||  |||| || ||||| ||||| ||||| |||||||||||||||  |||| |     
T  7021238 tgtaggatctacttggtagaaaactggcaatagaatcctatcatattttgctctgcaatcaactattttcacaagctcatccaaacaccaatgtgaatat 7021139  T
Q  476 gcatagttttgagagaatatgaccaaagaaatcaaggatgtttcaatagcttca 529  Q
    | | ||||| |||||||||||||||||  ||| || ||| ||||||| ||||||    
T  7021138 gaaaagtttggagagaatatgaccaaatgaatgaatgatttttcaattgcttca 7021085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 426 - 522
Target Start/End: Complemental strand, 7028791 - 7028695
Alignment:
Q  426 ctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaatcaaggatgtttcaat 522  Q
    |||| ||||| || ||||| ||||| || ||||||||||||  |||||| ||| ||||| |||| ||||||||||| |||||||| ||| |||||||    
T  7028791 ctctgcactcgactattttcacaagctcgtccaaacaccaatgtgaagatgcaaagtttggagaaaatatgaccaatgaaatcaatgatttttcaat 7028695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 426 - 522
Target Start/End: Complemental strand, 7035493 - 7035397
Alignment:
Q  426 ctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaatcaaggatgtttcaat 522  Q
    |||| ||||| || ||||| ||||| |||||||||||||||  |||||| ||| ||||| | || ||||||||||| |||||||| ||| |||||||    
T  7035493 ctctgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatcaatgatttttcaat 7035397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 718 - 799
Target Start/End: Original strand, 7070253 - 7070331
Alignment:
Q  718 gataaacaagagataaacaaaaaatacaagattattattgtgcattgtggttcttcctttgtctctctactatacataagat 799  Q
    ||||||||| ||| ||||||||||| || ||||| |   ||||||||||| | |||||||||||||||||| ||||||||||    
T  7070253 gataaacaaaagacaaacaaaaaatgcacgattaat---gtgcattgtggattttcctttgtctctctactctacataagat 7070331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 1e-22; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 391 - 530
Target Start/End: Complemental strand, 3953173 - 3953034
Alignment:
Q  391 gtagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagag 490  Q
    |||||||||||| | || ||||||||||| ||||||||| |||||||  ||||| |||||||| || |||||||||  |||||||||||||||||  |||    
T  3953173 gtagaaaacaggtattacaatctgtccatttttctctctgcactcaattattttcacaagttcttctaaacaccaacgtgaagaagcatagttttctgag 3953074  T
Q  491 aatatgaccaaagaaatcaaggatgtttcaatagcttcaa 530  Q
    ||||||| ||| ||||| || |||  |||||| |||||||    
T  3953073 aatatgatcaatgaaatgaacgatccttcaattgcttcaa 3953034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 375 - 507
Target Start/End: Original strand, 4220718 - 4220850
Alignment:
Q  375 ttgtaggatcaactttgtagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaaga 474  Q
    |||||||||| || | |||||||| ||| | || ||  ||||||| ||||||||| |||||||  ||||| |||||||| || |||||||||  ||||||    
T  4220718 ttgtaggatctacctcgtagaaaataggtattacaagttgtccatatttctctctgcactcaattatttttacaagttcttctaaacaccaatgtgaaga 4220817  T
Q  475 agcatagttttgagagaatatgaccaaagaaat 507  Q
    ||||||||||| ||||||||||||||| |||||    
T  4220818 agcatagttttcagagaatatgaccaatgaaat 4220850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 391 - 507
Target Start/End: Original strand, 3821496 - 3821612
Alignment:
Q  391 gtagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagag 490  Q
    |||||||| ||| |||| ||||||||||| ||||||| | ||||| |  ||||| ||||| ||||| |||||||||  |||||||||||||||||  |||    
T  3821496 gtagaaaataggtaatacaatctgtccatatttctctttgcactcgattattttcacaagctcatctaaacaccaatgtgaagaagcatagttttttgag 3821595  T
Q  491 aatatgaccaaagaaat 507  Q
    ||||||||||| |||||    
T  3821596 aatatgaccaatgaaat 3821612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 392 - 528
Target Start/End: Original strand, 4003233 - 4003369
Alignment:
Q  392 tagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagaga 491  Q
    ||||||||||| || | |||| |||||| ||||||| | |||||||  ||||| |||||||| || |||||||||  |||||||||||||||||  ||||    
T  4003233 tagaaaacaggtaaaacaatccgtccatatttctctttgcactcaattattttcacaagttcttctaaacaccaatgtgaagaagcatagttttctgaga 4003332  T
Q  492 atatgaccaaagaaatcaaggatgtttcaatagcttc 528  Q
    |||||||||| ||||| || |||  |||||| |||||    
T  4003333 atatgaccaatgaaatgaatgatccttcaattgcttc 4003369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 392 - 507
Target Start/End: Original strand, 4011712 - 4011827
Alignment:
Q  392 tagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagaga 491  Q
    ||||||||||| | || ||||||||||| ||||||| | |||||||  |||||  ||||||| || |||||||||  |||| ||||||||||||  ||||    
T  4011712 tagaaaacaggtattacaatctgtccatatttctctttgcactcaattattttcgcaagttcttctaaacaccaatgtgaacaagcatagttttatgaga 4011811  T
Q  492 atatgaccaaagaaat 507  Q
    |||||||||| |||||    
T  4011812 atatgaccaatgaaat 4011827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 376 - 552
Target Start/End: Complemental strand, 3916146 - 3915970
Alignment:
Q  376 tgtaggatcaactttgtagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaa 475  Q
    ||||||||| ||  || |||||||||| | || ||| ||| ||| ||||||| |||||||||| ||||| |||||||| |  |||||||||  |||| ||    
T  3916146 tgtaggatctaccctgaagaaaacaggtattacaatttgtgcatatttctctttacactcaactattttcacaagttcttttaaacaccaatgtgaacaa 3916047  T
Q  476 gcatagttttgagagaatatgaccaaagaaatcaaggatgtttcaatagcttcaagaagtgattctgctatttcatc 552  Q
    ||||||||||  |||||||||| ||| ||||| || |||  ||| || ||||||  |||||| |||| ||| |||||    
T  3916046 gcatagttttctgagaatatgatcaatgaaatgaatgatccttcgattgcttcaccaagtgaatctgatatgtcatc 3915970  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 376 - 507
Target Start/End: Original strand, 3811908 - 3812039
Alignment:
Q  376 tgtaggatcaactttgtagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaa 475  Q
    ||||||||| |||  |||||||| ||| | || ||  ||||||| | ||||| | |||||||  ||||| ||||| ||||| |||||||||  |||||||    
T  3811908 tgtaggatctactccgtagaaaataggtattacaaaatgtccatatgtctctttgcactcaattattttcacaagctcatctaaacaccaatgtgaagaa 3812007  T
Q  476 gcatagttttgagagaatatgaccaaagaaat 507  Q
    ||||||||||  |||||||||||||| |||||    
T  3812008 gcatagttttctgagaatatgaccaatgaaat 3812039  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 392 - 507
Target Start/End: Original strand, 4026469 - 4026584
Alignment:
Q  392 tagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagaga 491  Q
    ||||||||||| | || ||||||||||| ||||||| | || ||||  ||||| | |||||| || |||||||||  |||||||||||||||||  ||||    
T  4026469 tagaaaacaggtattacaatctgtccatatttctctttgcaatcaattattttcaaaagttcttctaaacaccaacttgaagaagcatagttttctgaga 4026568  T
Q  492 atatgaccaaagaaat 507  Q
    |||||| ||| |||||    
T  4026569 atatgatcaatgaaat 4026584  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 413 - 507
Target Start/End: Original strand, 4019530 - 4019624
Alignment:
Q  413 tgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaat 507  Q
    ||||||| ||||||||| || | ||  ||| |||||||||| |||||||||||   |||||||||||||| ||| |||||||||| ||| |||||    
T  4019530 tgtccatatttctctctgcattgaagtattgtgacaagttcttccaaacaccagcgtgaagaagcatagtcttgtgagaatatgatcaaggaaat 4019624  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 440 - 537
Target Start/End: Original strand, 3988170 - 3988267
Alignment:
Q  440 attttgacaagttcatccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaatcaaggatgtttcaatagcttcaagaagtga 537  Q
    ||||| ||||||||||| |||||||||  |||||||| ||| ||||  |||||||||||||| ||||| || ||   |||||| ||||||| ||||||    
T  3988170 attttcacaagttcatctaaacaccaatgtgaagaagaataattttttgagaatatgaccaatgaaattaacgagccttcaattgcttcaacaagtga 3988267  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 409 - 481
Target Start/End: Original strand, 3805802 - 3805874
Alignment:
Q  409 aatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatag 481  Q
    ||||||||||| ||||| ||| || | ||  ||| |||||||||| |||||||||||| ||||||||||||||    
T  3805802 aatctgtccatatttctttctgcattgaagtattgtgacaagttcgtccaaacaccaacatgaagaagcatag 3805874  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 507
Target Start/End: Original strand, 3825804 - 3825867
Alignment:
Q  444 tgacaagttcatccaaacaccaagatgaagaagcatagttttgagagaatatgaccaaagaaat 507  Q
    ||||| |||| || ||||||||| ||||||||||||||| ||| |||||||||| ||| |||||    
T  3825804 tgacatgttcttctaaacaccaacatgaagaagcatagtcttgtgagaatatgatcaaggaaat 3825867  T

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Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 391 - 537
Target Start/End: Original strand, 13399073 - 13399219
Alignment:
Q  391 gtagaaaacaggcaataaaatctgtccatctttctctctacactcaacaattttgacaagttcatccaaacaccaagatgaagaagcatagttttgagag 490  Q
    |||||||||||| | || ||| ||||||| ||||||| | |||||||  ||||| |||||||| || |||||||||  |||||||||||||||||  |||    
T  13399073 gtagaaaacaggtattacaatttgtccatatttctctttgcactcaattattttcacaagttcttctaaacaccaacgtgaagaagcatagttttctgag 13399172  T
Q  491 aatatgaccaaagaaatcaaggatgtttcaatagcttcaagaagtga 537  Q
    ||||||| ||| ||||| || |||  ||| || ||||||| ||||||    
T  13399173 aatatgatcaatgaaataaatgatccttcgattgcttcaaaaagtga 13399219  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 457 - 494
Target Start/End: Original strand, 12782174 - 12782211
Alignment:
Q  457 caaacaccaagatgaagaagcatagttttgagagaata 494  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  12782174 caaacaccaagttgaagaagcatagtttttagagaata 12782211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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