View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12952_low_24 (Length: 403)
Name: NF12952_low_24
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12952_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 11 - 389
Target Start/End: Complemental strand, 50056136 - 50055761
Alignment:
| Q |
11 |
gagcacgttggtattgtgctgccgatgatgcttttctctgtcaagcttgtgactcttctgttcattcagctaattctttagctcgaagacatgaaagagt |
110 |
Q |
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| T |
50056136 |
gagcacgttggtattgtgctgctgatgatgcttttctctgtcaagcttgtgactcttctgttcattcagctaattctttagctcgaagacatgaaagagt |
50056037 |
T |
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| Q |
111 |
tcgtttgaaaacagcttcgtacaagtccattaatggtgatgaattcttcaattgtggtcctttctctggcttcaccaagaaggcaagaacaccgagacag |
210 |
Q |
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| T |
50056036 |
tcgtttgaaaacagcttcgtacaagtccattaatggtgatgaattcttcaattgtggtcctttctctggcttcaccaagaaggcaagaacaccgagacag |
50055937 |
T |
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| Q |
211 |
gggaaacacaaatcaaaatcatcctcgagcagcgaaccagcaaggaataataataataatattccgtttcatcttgtgccggaattaggtttcgatgaag |
310 |
Q |
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| T |
50055936 |
gggaaacacaaatcaaaatcatcctcgagcagcgaaccagcaaggaataataat---aatattccgtttcatcttgtgccggaattaggtttcgatgaag |
50055840 |
T |
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| Q |
311 |
ttaattcaaattccattgaggaaaatgaggcgcaacttctttacagggtaccaattttcgatccttctattgctgattt |
389 |
Q |
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| T |
50055839 |
ttaattcaaattccattgaggaaaatgaggcgcaacttctttacagggtaccaattttcgatccttctattgctgattt |
50055761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 43867866 - 43867918
Alignment:
| Q |
11 |
gagcacgttggtattgtgctgccgatgatgcttttctctgtcaagcttgtgac |
63 |
Q |
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| T |
43867866 |
gagcacgttggttttgtgctgcagatgatgctttcctttgtcatggttgtgac |
43867918 |
T |
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