View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12952_low_27 (Length: 364)
Name: NF12952_low_27
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12952_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 6 - 345
Target Start/End: Original strand, 8930196 - 8930535
Alignment:
| Q |
6 |
aggagcacagatacaacttcaccaatctgtgtcgaataatgaatggctaatgtaaaacaacaaaacaaattttcatcatgttacataatctagtggtgtt |
105 |
Q |
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| T |
8930196 |
aggaccacaaatacaacttcaccaatctgtgtcgaataatgaatggctaatgtaaaacaacaaaacaaattttcatcatgttacaaaatctattggtgtt |
8930295 |
T |
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| Q |
106 |
aaactgaaacaagtttgtgttgtataagattcatgtgcattctcagcctccagactcattacacatgaacagtccgatacattaaagtttttgcatatgc |
205 |
Q |
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| T |
8930296 |
aaactgaaacaagtttgtgttgtataagattcatgtgcattctcagcctccagactcattacacatgaacagtccgatacattaaagtttttgcgtatgc |
8930395 |
T |
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| Q |
206 |
agagtccggaaaccataatcgannnnnnnnnactcaagaacaatacagaaattgcattttttgtttatttatgaaattgtggttttaattaatacgacaa |
305 |
Q |
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||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8930396 |
agagtccggaaaccatactcgatttttttttactcaagaacaatacagaaattgcgttttttgtttatttatgaaattgtggttttaattaatacgacaa |
8930495 |
T |
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| Q |
306 |
atctgaatgcatcgtgggtttgttgaaattacggtgagct |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
8930496 |
atctgaatgcatcgtgggtttgttgaaattacggtgagct |
8930535 |
T |
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