View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12952_low_29 (Length: 303)
Name: NF12952_low_29
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12952_low_29 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 8336443 - 8336719
Alignment:
| Q |
19 |
aaattaattctttcatattaattaactttgattgttaatcctaattatagagtctatatcaattgggagcacgacatgtgtgggttctaagtacacttcc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8336443 |
aaattaattctttcatattaattaactttgattgttaatcctaattatagagtctatatcaattgggagcacgacatgtgtgggttctaagtacacttcc |
8336542 |
T |
|
| Q |
119 |
attagggtgcttacctgcagctagatctacaatgggaggaccattaagggtttgtgtagattttgagaatgggttagcaacacaatacaataacatgtta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8336543 |
attagggtgcttacctgcagctagatctacaatgggaggaccattaagggtttgtgtagattttgagaatgggttagcagcacaatacaataacatgtta |
8336642 |
T |
|
| Q |
219 |
cagcaggggctcgcaactgttaaaggctcccttcctgattatgatattagatttgttgatgtctatactcctatgct |
295 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8336643 |
cagcaggggcttgcaactgttaaaggctcccttcctgattatgatattagatttgttgatgtctatactcctatgct |
8336719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University