View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12952_low_30 (Length: 291)

Name: NF12952_low_30
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12952_low_30
NF12952_low_30
[»] chr2 (2 HSPs)
chr2 (10-75)||(22049524-22049589)
chr2 (10-70)||(22007145-22007205)
[»] chr6 (1 HSPs)
chr6 (11-75)||(538608-538672)


Alignment Details
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 22049524 - 22049589
Alignment:
Q  10 aagaatattggatttaattccttgttggctaattaacaaccaccatttagactatcctattacaaa 75  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22049524 aagaatattggattgaattccttgttggctaattaacaaccagcatttagactatcctattacaaa 22049589  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 22007145 - 22007205
Alignment:
Q  10 aagaatattggatttaattccttgttggctaattaacaaccaccatttagactatcctatt 70  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22007145 aagaacattggatttaattccttgttggctaattaacaaccagcatttagactatcctatt 22007205  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 538672 - 538608
Alignment:
Q  11 agaatattggatttaattccttgttggctaattaacaaccaccatttagactatcctattacaaa 75  Q
    |||| |||||||||||||||| |||||||| |||||| ||| ||||||||| || ||||||||||    
T  538672 agaacattggatttaattcctcgttggctagttaacatccagcatttagaccattctattacaaa 538608  T

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