View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12952_low_31 (Length: 285)
Name: NF12952_low_31
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12952_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 277
Target Start/End: Complemental strand, 5322242 - 5321980
Alignment:
| Q |
15 |
aagaggaatcaacactttcatggatgatgaagggattaagagaggagaacaaatttcacccacacttttcaaagcaattcaagagtctagaatagctata |
114 |
Q |
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| T |
5322242 |
aagaggaatcaacactttcatggatgatgaagagattaagagaggagaacaaatttcacccacacttttcaaagcaattcaagagtctagaatagctata |
5322143 |
T |
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| Q |
115 |
attgtgttctcaaaaacctatgcatcctcaaaatggtgtcttcaagaacttgtcaaaatcgttgaatgtttcaaagccaaggaactagtgatatttccag |
214 |
Q |
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| T |
5322142 |
attgtgttctcaaaaacctatgcatcctcaaaatggtgtcttcaagaacttgtcaaaatcgttgaatgtttcaaagccaaggaactagtgatatttccag |
5322043 |
T |
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| Q |
215 |
tgttttacaacgtggatccttcggaggttcgaaatcagaagacaagttatggagaacaattgg |
277 |
Q |
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| T |
5322042 |
tgttttacaacgtggatccttcggaggttcgaaatcagaagacaagttatggagaacaattgg |
5321980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 8483786 - 8483917
Alignment:
| Q |
19 |
ggaatcaacactttcatggatgatgaagggattaagagaggagaacaaatttcacccacacttttcaaagcaattcaagagtctagaatagctataattg |
118 |
Q |
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| T |
8483786 |
ggaatcaacacttccattgatgatgaagtgataaagagaggagaacaaatttcaccaaccattttcaaagcaattgaaaagtctaggatggccataatag |
8483885 |
T |
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| Q |
119 |
tgttctcaaaaacctatgcatcctcaaaatgg |
150 |
Q |
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| T |
8483886 |
tgttctccaaaacctatgcatcctcaaaatgg |
8483917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 55 - 251
Target Start/End: Original strand, 8077225 - 8077413
Alignment:
| Q |
55 |
agaggagaacaaatttcacccacacttttcaaagcaattcaagagtctagaatagctataattgtgttctcaaaaacctatgcatcctcaaaatggtgtc |
154 |
Q |
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| T |
8077225 |
agaggagtacaaatttcacctaccattttcaaagcaattgaaaagtctaggatggccataacagtgttctccaaaacctatgcatcctcaaaatgg---- |
8077320 |
T |
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| Q |
155 |
ttcaagaacttgtcaaaatcgttgaatgtttcaaagccaaggaactagtgatatttccagtgttttacaacgtggatccttcggaggttcgaaatca |
251 |
Q |
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| T |
8077321 |
----ggaacttgtcaaaatcattggatgttttatagccaaggaactagtgaagtttccggtgttttacaacgttgatccatcggagattggaaatca |
8077413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 8483927 - 8483986
Alignment:
| Q |
192 |
caaggaactagtgatatttccagtgttttacaacgtggatccttcggaggttcgaaatca |
251 |
Q |
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| T |
8483927 |
caaggaactagtgaagtttccggtgttttacaacgttgatccatcggagattcgaaatca |
8483986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 62 - 251
Target Start/End: Original strand, 59860 - 60049
Alignment:
| Q |
62 |
aacaaatttcacccacacttttcaaagcaattcaagagtctagaatagctataattgtgttctcaaaaacctatgcatcctcaaaatggtgtcttcaaga |
161 |
Q |
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||||||||||| | || |||||||| |||| || ||||||| || || ||||| |||||||| |||||||||||||||||||||||||| ||||| | |
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| T |
59860 |
aacaaatttcatctaccattttcaaattaattgaaaagtctaggatggccataatagtgttctccaaaacctatgcatcctcaaaatggtgccttcatca |
59959 |
T |
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| Q |
162 |
acttgtcaaaatcgttgaatgtttcaaagccaaggaactagtgatatttccagtgttttacaacgtggatccttcggaggttcgaaatca |
251 |
Q |
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| T |
59960 |
gtttgtcaaaatcattggatgttttaaagccaaggaactagtggtgtttccagtgttttacaatgttgatgcatcggagattcggaatca |
60049 |
T |
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