View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12952_low_33 (Length: 273)
Name: NF12952_low_33
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12952_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 33700371 - 33700618
Alignment:
| Q |
13 |
agcagagataatggagggaggttcattccattgaatcacatgcacacataatacatagctttatgtgatctatacagataatttgttttacctaatatta |
112 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33700371 |
agcagacataatggagggaggttcattccattgaatcacatgcacacataatacatagctttatgtgatctataccgataatttgttttacctaatatta |
33700470 |
T |
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| Q |
113 |
ggcacagcagagtgagtactagagatggaactcgggtcctatttagtc--tgtcctatttcatgtaggtagaaacaatcaaagtcatttattttcaaaat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33700471 |
ggcacagcagagtgagtactagagatggaactcgggtcctatttagtctttgtcctatttcatgtaggtagaaacaatcaaagtcatttattttcaaaat |
33700570 |
T |
|
| Q |
211 |
gattggagagtaattatttccaaatgtgtatcacaattatgtcataaa |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33700571 |
gattggagagtaattatttccaaatgtgtatcacaattatgtcataaa |
33700618 |
T |
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