View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12952_low_34 (Length: 268)
Name: NF12952_low_34
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12952_low_34 |
 | |
|
| [»] scaffold0691 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 2807617 - 2807878
Alignment:
| Q |
1 |
tgatgatgtatggcaagaagatttttctgaccaagttgaatttgctatgcctaacaacaataaaggtagtaggatcataatcacaactagaatgatgcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2807617 |
tgatgatgtatggcaagaagatttttctgaccaggttgaatttgctatgcctaacaacaataaaggtagtaggatcataatcacaactagaatgatgcaa |
2807716 |
T |
|
| Q |
101 |
gttgcagattttttcaagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaagcatgggaactcttctgcaagaaagtattta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2807717 |
gttgcagattttttcaagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaagcatgggaactcttctgcaagaaagtattta |
2807816 |
T |
|
| Q |
201 |
gatttgatcttgatgggcactgtccaccggagcttgaggctatgtcaatagatattcttcga |
262 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2807817 |
gattcgatcttgatgggcactgtccaccggagcttgaggctatgtcaatagatattgttcga |
2807878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 2759564 - 2759804
Alignment:
| Q |
1 |
tgatgatgtatggcaagaagatttttctgaccaagttgaatttgctatgcctaacaacaataaaggtagtaggatcataatcacaactagaatgatgcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
2759564 |
tgatgatgtatggcaagaagatttttccgaccaggttgaatttgccatgcctaataacaacaaaggtagtaggatcataatcaccactagaattatgcaa |
2759663 |
T |
|
| Q |
101 |
gttgcagattttttcaagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaagcatgggaactcttctgcaagaaagtattta |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2759664 |
gttgcagattttttcaagaaatcatttctagttcatgttcacaacttgcaacttttgactccaaacaaagcatgggaactcttctgcaagaaagtattta |
2759763 |
T |
|
| Q |
201 |
gatttgatcttgatgggcactgtccaccggagcttgaggct |
241 |
Q |
| |
|
||| |||||||| |||| ||||||||||||||||||||| |
|
|
| T |
2759764 |
gatatgatcttggagggcgttgtccaccggagcttgaggct |
2759804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 2818907 - 2819145
Alignment:
| Q |
1 |
tgatgatgtatggcaagaagatttttctgaccaagttgaatttgctatgcctaacaacaataaaggtagtaggatcataatcacaactagaatgatgcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||| ||||| || ||||| ||||||||||||||||||||||| || |||||||||||| |
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|
| T |
2818907 |
tgatgatgtatggcaagaagatttttccgaccaggttgaatttgccatgcccaataacaacaaaggtagtaggatcataatcaccacaagaatgatgcaa |
2819006 |
T |
|
| Q |
101 |
gttgcagattttttcaagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaagcatgggaactcttctgcaagaaagtattta |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2819007 |
gttgcagattttttcaagaaatcatttctagttcatgttcacaacttgcaacttttgactccaaacaaagcatgggaactcttctgcaagaaagtattta |
2819106 |
T |
|
| Q |
201 |
gatttgatcttgatgggcactgtccaccggagcttgagg |
239 |
Q |
| |
|
| | ||| |||| ||| | ||||||||||| ||||||| |
|
|
| T |
2819107 |
ggtctgagcttggtggtcgttgtccaccggaacttgagg |
2819145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 2 - 235
Target Start/End: Original strand, 2790671 - 2790904
Alignment:
| Q |
2 |
gatgatgtatggcaagaagatttttctgaccaagttgaatttgctatgcctaacaacaataaaggtagtaggatcataatcacaactagaatgatgcaag |
101 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||| || || || |||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
2790671 |
gatgatgtatggcaagaagatttttccgaccagattgaatttgccattccaaataacaataaaggttgtaggatcataatcaccactagaatgatgcaag |
2790770 |
T |
|
| Q |
102 |
ttgcagattttttcaagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaagcatgggaactcttctgcaagaaagtatttag |
201 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
2790771 |
ttgcagattttttcaagaaatcttttctagttcatgttcacaacttgcaacttttgacaccaaacaaagcatgggaactcttctgcaagaaagcattcag |
2790870 |
T |
|
| Q |
202 |
atttgatcttgatgggcactgtccaccggagctt |
235 |
Q |
| |
|
|||||| |||| |||||| |||||||| |||||| |
|
|
| T |
2790871 |
atttgagcttggtgggcattgtccaccagagctt |
2790904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 2855598 - 2855351
Alignment:
| Q |
1 |
tgatgatgtatggcaagaagatttttctgaccaagttgaatttgctatgcctaacaacaataaaggtagtaggatcataatcacaactagaatgatgcaa |
100 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2855598 |
tgatgatgtttggcaagaagatttttccgaccaggttgaatttgccatgcctaataacaataaaggtagtaggatcataatcactactagaatgatgcat |
2855499 |
T |
|
| Q |
101 |
gttgcagattttttcaagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaagcatgggaactcttctgcaagaaagtattta |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||| |||| ||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2855498 |
gttgcagaatttttcaagaaatcctttctaactcatattcataacctgcaacttttgcctccaaacaaagcatgggaactcttctgtaagaaagtattta |
2855399 |
T |
|
| Q |
201 |
gatttgatcttgatgggcactgtccaccggagcttgaggctatgtcaa |
248 |
Q |
| |
|
||||||| | || |||||| |||||||| |||||||||||| |||||| |
|
|
| T |
2855398 |
gatttgaacctggtgggcattgtccaccagagcttgaggctgtgtcaa |
2855351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 2838388 - 2838141
Alignment:
| Q |
1 |
tgatgatgtatggcaagaagatttttctgaccaagttgaatttgctatgcctaacaacaataaaggtagtaggatcataatcacaactagaatgatgcaa |
100 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| |||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2838388 |
tgatgatgtttggcaagaagatttttccgaccagattgaatttgccatgcctaataacaataaaggtagtaggatcataatcactactagaatgatgcat |
2838289 |
T |
|
| Q |
101 |
gttgcagattttttcaagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaagcatgggaactcttctgcaagaaagtattta |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||| |||| ||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2838288 |
gttgcagaatttttcaagaaatcctttctaactcatattcataacctgcaacttttgcctccaaacaaagcatgggaactcttctgtaagaaagtattta |
2838189 |
T |
|
| Q |
201 |
gatttgatcttgatgggcactgtccaccggagcttgaggctatgtcaa |
248 |
Q |
| |
|
||||||| | || |||||| |||||||| |||||| ||||| |||||| |
|
|
| T |
2838188 |
gatttgaacctggtgggcattgtccaccagagcttaaggctgtgtcaa |
2838141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 2797711 - 2797962
Alignment:
| Q |
1 |
tgatgatgtatggcaagaagatttttctgaccaagttgaatttgctatgcctaacaacaataaaggtagtaggatcataatcacaactagaatgatgcaa |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| |||| | ||||||||| ||||| || |||||||||||| |
|
|
| T |
2797711 |
tgatgatgtatggcaagaagacttttctgaccaggttgaatttgccatgcctaataacaacaaagcaaataggatcatcatcaccacgagaatgatgcaa |
2797810 |
T |
|
| Q |
101 |
gttgcagattttttcaagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaagcatgggaactcttctgcaagaaagtattta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| | |
|
|
| T |
2797811 |
gttgcagattttttcaagaaatcctttcaagttcatgttcacaacttgcaacttttgacaccaaacaaatcatgggaactcttctgcaagaaagcattca |
2797910 |
T |
|
| Q |
201 |
gatttgatcttgatgggcactgtccaccggagcttgaggctatgtcaataga |
252 |
Q |
| |
|
||||||| ||| |||||| |||||||| |||||| | | ||||||||||| |
|
|
| T |
2797911 |
gatttgaggttggtgggcattgtccaccagagcttaactccatgtcaataga |
2797962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 2769419 - 2769653
Alignment:
| Q |
1 |
tgatgatgtatggcaagaagatttttctgaccaagttgaatttgctatgcctaacaacaataaaggtagtaggatcataatcacaactagaatgatgcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||| | ||||| || ||||||||| |||||||||||||||| || || ||||||||||| |
|
|
| T |
2769419 |
tgatgatgtatggcaagaagatttttccgaccaggttgaattttccatgccaaataacaataaacgtagtaggatcataataaccacaagaatgatgcat |
2769518 |
T |
|
| Q |
101 |
gttgcagattttttcaagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaagcatgggaactcttctgcaagaaagtattta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||| ||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
2769519 |
gttgcagattttttcaagaaatcctttctagttcatgttcttaacatgcaacttttgcctcctaacaaagcatgggaactcttctgcaagaaagcattca |
2769618 |
T |
|
| Q |
201 |
gatttgatcttgatgggcactgtccaccggagctt |
235 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||||| |
|
|
| T |
2769619 |
gatttgaacttgatgggcaatgtccaccagagctt |
2769653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 5413236 - 5413470
Alignment:
| Q |
1 |
tgatgatgtatggcaagaagatttttctgaccaagttgaatttgctatgcctaacaacaataaaggtagtaggatcataatcacaactagaatgatgcaa |
100 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5413236 |
tgatgatgtatggcaacaagatttctctgaccaggttgaatttgcgatgcctaaaaacaataaaggtagtaggatcataatcaccactagaatgatgcaa |
5413335 |
T |
|
| Q |
101 |
gttgcagattttttcaagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaagcatgggaactcttctgcaagaaagtattta |
200 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| | ||||||||| || ||| |
|
|
| T |
5413336 |
gttgcggattttttcaaaaaatcctttctagtatatgttcacaacctgcaacttttgcctccaaacaaagcatgggaactttactgcaagaaggtgtttg |
5413435 |
T |
|
| Q |
201 |
gatttgatcttgatgggcactgtccaccggagctt |
235 |
Q |
| |
|
||||||| |||| |||| | |||||| |||||||| |
|
|
| T |
5413436 |
gatttgaacttggtgggaattgtccatcggagctt |
5413470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 2749345 - 2749592
Alignment:
| Q |
1 |
tgatgatgtatggcaagaagatttttctgaccaagttgaatttgctatgcctaacaacaataaaggtagtaggatcataatcacaactagaatgatgcaa |
100 |
Q |
| |
|
|||||| |||||||||||||||||| | ||||| ||| ||||||| ||||| || |||||||||||||||||||| || ||||| |||||||||||| | |
|
|
| T |
2749345 |
tgatgacgtatggcaagaagattttgcggaccaggttcaatttgccatgccaaataacaataaaggtagtaggattatcatcaccactagaatgatgtat |
2749444 |
T |
|
| Q |
101 |
gttgcagattttttcaagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaagcatgggaactcttctgcaagaaagtattta |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||| |||||||| ||||||||||| |||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
2749445 |
gttgcagattttttcaaaaaatcctttctaactcatattcacaacctgcaacttttgcctccaaacaaagcatgggaacttttctgcaagagagtattta |
2749544 |
T |
|
| Q |
201 |
gatttgatcttgatgggcactgtccaccggagcttgaggctatgtcaa |
248 |
Q |
| |
|
||| ||| |||| ||| || |||||| | || ||||||||| |||||| |
|
|
| T |
2749545 |
gatatgagcttggtggacattgtccatcagaacttgaggctgtgtcaa |
2749592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 202
Target Start/End: Original strand, 3201381 - 3201495
Alignment:
| Q |
88 |
tagaatgatgcaagttgcagattttttcaagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaagcatgggaactcttctgc |
187 |
Q |
| |
|
|||||||||||| || || || | ||| |||||||| ||||| |||||| ||||| || | |||| |||| ||||||||||||| |||||||| || ||| |
|
|
| T |
3201381 |
tagaatgatgcatgtagctgaatattttaagaaatcttttcttgttcatattcaccacctacaacctttgcctccaaacaaagcgtgggaactgttttgc |
3201480 |
T |
|
| Q |
188 |
aagaaagtatttaga |
202 |
Q |
| |
|
|| || | ||||||| |
|
|
| T |
3201481 |
aacaaggcatttaga |
3201495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 202
Target Start/End: Original strand, 3722009 - 3722095
Alignment:
| Q |
116 |
aagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaagcatgggaactcttctgcaagaaagtatttaga |
202 |
Q |
| |
|
|||||||| |||| |||||| ||||| | | |||| ||||| ||||||||||||||||||||| || ||||| || ||||||||| |
|
|
| T |
3722009 |
aagaaatcttttcctgttcatattcacgaactacaacctttgattccaaacaaagcatgggaactgttttgcaacaaggtatttaga |
3722095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 3197988 - 3197940
Alignment:
| Q |
154 |
tttgactccaaacaaagcatgggaactcttctgcaagaaagtatttaga |
202 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||| || | ||||||| |
|
|
| T |
3197988 |
tttgactccaaacaaagcatgggaactgttttgcaacaaggcatttaga |
3197940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 5940 - 5700
Alignment:
| Q |
1 |
tgatgatgtatggcaagaagatttttctgaccaagttgaatttgctatgcctaacaacaataaaggtagtaggatcataatcacaactagaatgatgcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||||| || |||||||||| |
|
|
| T |
5940 |
tgatgatgtatggcaagaagatttttctgaccaggttgaatttgccatgcctaataacaataaaggtagtaggattataatcaccacaagaatgatgctt |
5841 |
T |
|
| Q |
101 |
gttgcagattttttcaagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaagcatgggaactcttctgcaagaaagtattta |
200 |
Q |
| |
|
||||| || |||||||||||||||||| |||||||||||||||| ||||||| ||| |||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
5840 |
gttgccgaatttttcaagaaatcctttatagttcatgttcacaaactgcaactcttgcctccaaacaaagtatgggaactcttctgcaaaaaagtattta |
5741 |
T |
|
| Q |
201 |
gatttgatcttgatgggcactgtccaccggagcttgaggct |
241 |
Q |
| |
|
||||||| | || |||||| ||||||| |||||||||||| |
|
|
| T |
5740 |
gatttgaacctggtgggcattgtccacttgagcttgaggct |
5700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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