View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12952_low_4 (Length: 716)

Name: NF12952_low_4
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12952_low_4
NF12952_low_4
[»] chr4 (1 HSPs)
chr4 (5-696)||(43927732-43928427)


Alignment Details
Target: chr4 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 5 - 696
Target Start/End: Complemental strand, 43928427 - 43927732
Alignment:
Q  5 gaggagcacagaccgttgcaggttgcgcgcagttagttggtttgtgaagaagttccattccaactctgcaaaaccaaaaatccttttannnnnnnatata 104  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  43928427 gaggatcacagaccgttgcaggttgcgcgcagttagttggtttgtgaagaagttccattccaactctgcaaaaccaaaaatccttttattttt--atata 43928330  T
Q  105 acttttctttaatatgttttgatttcaatccttgttcttgttttacatttccttctggtttttatctccgcttcatatctctctcttggtttggtgctca 204  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43928329 acttttctttaatatgttttgatttcaatccttcttcttgttttacatttccttctggtttttatctccgcttcatatttctctcttggtttggtgctca 43928230  T
Q  205 ttgttgttaaggtatttcttctcatatatttattttctttcaatccattgtcttctattcaatgcatccaatcccaatatcagaaaatggcaatttggaa 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43928229 ttgttgttaaggtatttcttctcatatatttattttctttcaatccattgtcttctattca-tgcatccaatcccaatatcagaaaatggcaatttggaa 43928131  T
Q  305 catatatttaatgatttgcttatgt-------atttatttttgttacatcattggttatgcatgtgttttttaattaatcatgaacaacttgttcatatt 397  Q
    ||||||||||||||||| ||||| |       |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43928130 catatatttaatgattttcttatctttcgtctatttatttttgttaaatcattggttatgcatgtgttttttaattaatcatgaacaacttgttcatatt 43928031  T
Q  398 gttcattgtcnnnnnnngttattgtaacatgcaattctaacttaattcaatgatttaaacccttgcatgcatttgtcttataacatgtgnnnnnnnatta 497  Q
    ||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  43928030 gttcattgtcaaaaaaagttattgtaacatgcaattctaacttaattcaatgatttaaacccttgcatgcatttgtcttataacatgtgtttttttatta 43927931  T
Q  498 ttcctaaatgattttggggggttttgttttgtagattcttaaccatgatttatttttgtaggttctttgattcctaggaaatcaaagatgccaagtgttg 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43927930 ttcctaaatgattttggggggttttgttttgtagattcttaaccatgatttatttttgtaggttctttgattcctaggaaatcaaagatgccaagtgttg 43927831  T
Q  598 ttccaattgaaggaaataaaatgaatgaacttgagaacccttcaccctctaagaacatctataataaaatcaattcaccaagaataccattgagcccac 696  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43927830 ttccaattgaaggaaataaaatgaatgaacttgagaacccttcaccctctaagaacatctataataaaatcaattcaccaagaataccatcgagcccac 43927732  T

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