View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12952_low_43 (Length: 220)
Name: NF12952_low_43
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12952_low_43 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 38305725 - 38305833
Alignment:
| Q |
94 |
taaaatcttgtaaatatatcattacctcgtaaaaagattgagcttcaccaaaaataaagtcaacgtcaccctgaatataacaattcttaaaataatgacg |
193 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38305725 |
taaaatcttgtaaatatattattacctcgtaaaaagattgagcttcaccaaaaataaagtcaacgtcaccctgaatataacaattcttaaaataatgacg |
38305824 |
T |
|
| Q |
194 |
tcccgttct |
202 |
Q |
| |
|
||||||||| |
|
|
| T |
38305825 |
tcccgttct |
38305833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 38294357 - 38294430
Alignment:
| Q |
127 |
aagattgagcttcaccaaaaataaagtcaacgtcaccctgaatataacaattcttaaaataatgacgtcccgtt |
200 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
38294357 |
aagattgggcttcaccaaaaatgaagtcaacttcaccctgaatataacaattcttaaaatagtgacgccccgtt |
38294430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 38305674 - 38305729
Alignment:
| Q |
10 |
aaccaaaagcaaaatttgaagaactacatgatacttttaaagggtctaaaataaaa |
65 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38305674 |
aaccaaaagcaaaatttgaagaactgcatgatacttttaaagggtctaaaataaaa |
38305729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 38301284 - 38301367
Alignment:
| Q |
114 |
attacctcgtaaaaagattgagcttcaccaaaaataaagtcaacgtcaccctgaatataacaattcttaaaataatgacgtccc |
197 |
Q |
| |
|
|||||||| || |||| || |||||||||||||| || ||||| ||||| |||||||||||||| ||| |||||||||||||| |
|
|
| T |
38301284 |
attacctcaaaataagactgggcttcaccaaaaatgaaatcaacttcaccttgaatataacaatttttataataatgacgtccc |
38301367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 41042409 - 41042479
Alignment:
| Q |
127 |
aagattgagcttcaccaaaaataaagtcaacgtcaccctgaatataacaattcttaaaataatgacgtccc |
197 |
Q |
| |
|
|||||||| |||| |||||||| |||||| | ||||| |||||||||||||| ||||| || ||||||||| |
|
|
| T |
41042409 |
aagattgaccttccccaaaaatgaagtcatcttcaccttgaatataacaatttttaaagtattgacgtccc |
41042479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 18744479 - 18744396
Alignment:
| Q |
114 |
attacctcgtaaaaagattgagcttcaccaaaaataaagtcaacgtcaccctgaatataacaattcttaaaataatgacgtccc |
197 |
Q |
| |
|
|||||||| || ||||||| |||| ||||||||| |||||||| ||||| |||||||||||||||||| | |||||||||||| |
|
|
| T |
18744479 |
attacctcaaaataagattgggcttgaccaaaaatgaagtcaacttcaccttgaatataacaattcttatagtaatgacgtccc |
18744396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University