View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12952_low_44 (Length: 211)

Name: NF12952_low_44
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12952_low_44
NF12952_low_44
[»] chr8 (7 HSPs)
chr8 (1-193)||(10601053-10601246)
chr8 (10-192)||(20526159-20526344)
chr8 (107-192)||(23558718-23558803)
chr8 (42-179)||(14505721-14505859)
chr8 (42-179)||(37590039-37590177)
chr8 (116-179)||(19299023-19299086)
chr8 (42-179)||(15990412-15990550)
[»] chr2 (9 HSPs)
chr2 (1-197)||(10973530-10973729)
chr2 (1-192)||(2973408-2973600)
chr2 (12-174)||(14230993-14231156)
chr2 (32-195)||(17826741-17826905)
chr2 (73-151)||(511241-511319)
chr2 (36-177)||(11553321-11553463)
chr2 (36-179)||(11818445-11818589)
chr2 (42-179)||(16206539-16206677)
chr2 (90-178)||(23379917-23380005)
[»] chr1 (7 HSPs)
chr1 (1-193)||(16678732-16678925)
chr1 (11-193)||(47726227-47726415)
chr1 (11-193)||(47747533-47747721)
chr1 (42-192)||(2002526-2002677)
chr1 (74-174)||(30981259-30981359)
chr1 (3-174)||(34696110-34696282)
chr1 (40-179)||(41117187-41117327)
[»] chr6 (3 HSPs)
chr6 (1-197)||(30140922-30141119)
chr6 (36-178)||(16416595-16416738)
chr6 (36-187)||(23508844-23508996)
[»] chr4 (12 HSPs)
chr4 (1-197)||(54027686-54027883)
chr4 (1-193)||(27066334-27066527)
chr4 (1-196)||(12355183-12355379)
chr4 (1-193)||(27087435-27087628)
chr4 (1-143)||(27066578-27066721)
chr4 (1-143)||(27066772-27066915)
chr4 (93-178)||(4462624-4462709)
chr4 (42-188)||(28860789-28860936)
chr4 (42-179)||(55227612-55227750)
chr4 (116-179)||(16582340-16582403)
chr4 (116-179)||(54823744-54823807)
chr4 (42-179)||(30859363-30859501)
[»] chr5 (11 HSPs)
chr5 (10-193)||(26683445-26683629)
chr5 (10-197)||(29754938-29755125)
chr5 (1-178)||(5335212-5335390)
chr5 (32-166)||(40299892-40300027)
chr5 (18-167)||(22864512-22864662)
chr5 (104-196)||(23976592-23976684)
chr5 (36-179)||(36044911-36045055)
chr5 (42-179)||(22292379-22292517)
chr5 (40-179)||(27493251-27493391)
chr5 (129-188)||(13948782-13948841)
chr5 (129-196)||(18759803-18759870)
[»] scaffold1964 (1 HSPs)
scaffold1964 (3-131)||(1073-1202)
[»] scaffold0643 (1 HSPs)
scaffold0643 (12-194)||(1018-1201)
[»] chr3 (6 HSPs)
chr3 (11-190)||(12370776-12370956)
chr3 (104-167)||(12749485-12749548)
chr3 (42-192)||(18765582-18765733)
chr3 (42-179)||(6006037-6006175)
chr3 (116-196)||(31935315-31935395)
chr3 (117-179)||(36144802-36144864)
[»] scaffold0650 (1 HSPs)
scaffold0650 (36-196)||(288-449)
[»] chr7 (6 HSPs)
chr7 (36-179)||(48770106-48770250)
chr7 (42-179)||(32480215-32480353)
chr7 (40-179)||(15633227-15633367)
chr7 (95-177)||(27810590-27810672)
chr7 (116-178)||(30502581-30502643)
chr7 (116-197)||(3896540-3896621)
[»] scaffold0019 (1 HSPs)
scaffold0019 (32-174)||(73345-73488)
[»] scaffold0303 (1 HSPs)
scaffold0303 (42-188)||(14197-14344)
[»] scaffold0789 (1 HSPs)
scaffold0789 (116-196)||(4201-4281)


Alignment Details
Target: chr8 (Bit Score: 146; Significance: 4e-77; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 10601053 - 10601246
Alignment:
Q  1 tcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcagg 99  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  10601053 tcatcacgactttccggtctttgctctcgtccaagtttaccaactctcaggtggagtttgttcggcgacaagctaatgtggtggctcacactctcgcagg 10601152  T
Q  100 ggaagccacatttctcgctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaatgcattaagcacttttc 193  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||| || |||||||||||||||||||||||||||||  ||||||||||||    
T  10601153 ggaagccacatttctcgctagtcccactatttatcttcatatacccaattatattgaaactttgattactaatgaaatgctataagcacttttc 10601246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 10 - 192
Target Start/End: Complemental strand, 20526344 - 20526159
Alignment:
Q  10 cttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccac 108  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||||||||||||| |||||    
T  20526344 cttcccggtttttgctctcgttcaaatttaccaactctcgggtggagtttgttcggcgacaagttaatgtggtggctcatactctcgcaggggaggccac 20526245  T
Q  109 atttctcgctagtcccacaatttattttcatatacccagttgtattgaaactttgat--tactaatgaaatgcattaagcactttt 192  Q
    ||||||| |||||| ||| ||||||||||||||||||| ||||||||||||||| ||  ||||||||||||||  ||| |||||||    
T  20526244 atttctcactagtcgcactatttattttcatatacccaattgtattgaaactttaattatactaatgaaatgctataaacactttt 20526159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 192
Target Start/End: Original strand, 23558718 - 23558803
Alignment:
Q  107 acatttctcgctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaatgcattaagcactttt 192  Q
    |||||||| ||||||||||| ||||||||||| ||||||   |||||||| |||||||||  ||||||||||   |||||||||||    
T  23558718 acatttctagctagtcccactatttattttcacataccccaatgtattgagactttgattgttaatgaaatgttataagcactttt 23558803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 14505721 - 14505859
Alignment:
Q  42 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 140  Q
    |||||| |||||||||||||| ||| | |||| || ||||| |||||  |||| ||| |||| ||||| | | | ||||||||| |  |||||||| |||    
T  14505721 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaata 14505820  T
Q  141 tacccagttgtattgaaactttgattactaatgaaatgc 179  Q
    |||||| ||||||||||||| | ||||  ||||||||||    
T  14505821 tacccaattgtattgaaactcttattataaatgaaatgc 14505859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 42 - 179
Target Start/End: Complemental strand, 37590177 - 37590039
Alignment:
Q  42 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 140  Q
    |||||| |||||||||||||| ||| | |||| || ||||| |||||  |||| ||| |||| ||||| | | | |||||| || |  |||||||| |||    
T  37590177 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagttccgccgtttattttaata 37590078  T
Q  141 tacccagttgtattgaaactttgattactaatgaaatgc 179  Q
    |||||| ||||||||||||| | |||| |||||||||||    
T  37590077 tacccaattgtattgaaactcttattattaatgaaatgc 37590039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 19299086 - 19299023
Alignment:
Q  116 gctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaatgc 179  Q
    ||||||||| |  |||||||| ||||||||| ||||||||||| ||| |||| |||||||||||    
T  19299086 gctagtcccgccgtttattttgatatacccaattgtattgaaatttttattattaatgaaatgc 19299023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 179
Target Start/End: Complemental strand, 15990550 - 15990412
Alignment:
Q  42 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 140  Q
    |||||| |||||||||||||| ||| | ||||  | ||||| |||||  |||| ||| |||| ||||| | | | ||||||||| |  |||||||| |||    
T  15990550 aactctagggtggagtttgttaggcgacaagcctacgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaata 15990451  T
Q  141 tacccagttgtattgaaactttgattactaatgaaatgc 179  Q
    |||||| ||||||||||||| | ||||  ||||||||||    
T  15990450 tacccaattgtattgaaactcttattataaatgaaatgc 15990412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 10973729 - 10973530
Alignment:
Q  1 tcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcagg 99  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||    
T  10973729 tcatcacggcttcccggtctttgctctcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagctaatgtggtggctcacactctcgtagg 10973630  T
Q  100 ggaagccacatttctcgctagtcccacaatttattttca--tatacccagttgtattgaaactttgattactaatgaaatgcattaagcacttttccctc 197  Q
    ||||||||||||||||| | |||||||||||||||||||  |||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10973629 ggaagccacatttctcgtttgtcccacaatttattttcatatatatccaattgtattgaaactttgattactaatgaaatgcattaaacacttttccctc 10973530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 2973600 - 2973408
Alignment:
Q  1 tcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcagg 99  Q
    |||||||| |||||  |||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||| ||||| |||||||||||| |    
T  2973600 tcatcacggcttcctagtctttgctctcgtccaagtttaccaactctcgggtggagtttgttcggccacaagctaatgttgtggcccacactctcgcaag 2973501  T
Q  100 ggaagccacatttctcgctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaatgcattaagcactttt 192  Q
    ||||||| ||||||||||||||||||| || ||||||| |||||||| ||||||||||||||||||||||||||||||||  |||||||||||    
T  2973500 ggaagccgcatttctcgctagtcccactatgtattttcgtatacccaattgtattgaaactttgattactaatgaaatgctataagcactttt 2973408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 12 - 174
Target Start/End: Original strand, 14230993 - 14231156
Alignment:
Q  12 tcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacat 110  Q
    |||||||||||||| | || |||||||||||||||| | |||||||||||| ||| | ||||||||||||||||||||||||| ||| ||||||||||||    
T  14230993 tcccggtctttgcttttgtccaagtttaccaactctagagtggagtttgttaggcgacaagctaatgtggtggctcacactcttgcaagggaagccacat 14231092  T
Q  111 ttctcgctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatga 174  Q
    ||||||||||||||   || |||||||||||||||| |||||||||||||||||||| ||||||    
T  14231093 ttctcgctagtcccgttatctattttcatatacccaattgtattgaaactttgattattaatga 14231156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 17826741 - 17826905
Alignment:
Q  32 caagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatt 130  Q
    |||||||| |||||||  ||||||||||| | ||| | ||| ||||||||||||||||||| | | ||| ||||||| ||| |||||||||||| | |||    
T  17826741 caagtttagcaactctacggtggagtttgctaggcgacaagataatgtggtggctcacactgttgtaggagaagccatattcctcgctagtcccgctatt 17826840  T
Q  131 tattttcatatacccagttgtattgaaactttgattactaatgaaatgcattaagcacttttccc 195  Q
    |||| |||||||| || ||||||||||||||||||||  |||||||| |  ||||||| ||||||    
T  17826841 tattatcatatactcaattgtattgaaactttgattatcaatgaaatactataagcacctttccc 17826905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 511319 - 511241
Alignment:
Q  73 taatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccagttgt 151  Q
    ||||||||||||||||||||| ||| | |||||||||||||||||||||||| | ||||||||||||||||||| ||||    
T  511319 taatgtggtggctcacactcttgcaagagaagccacatttctcgctagtcccgctatttattttcatatacccaattgt 511241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 36 - 177
Target Start/End: Original strand, 11553321 - 11553463
Alignment:
Q  36 tttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttatt 134  Q
    |||||||||||| |||||||||||  ||||| | ||||||||| ||| | |||   ||||||||| ||||||||||| || ||||||||||| |||||||    
T  11553321 tttaccaactctagggtggagtttactcggcgacaagctaatgaggttgatcatgttctcgcaggagaagccacattactagctagtcccaccatttatt 11553420  T
Q  135 ttcatatacccagttgtattgaaactttgattactaatgaaat 177  Q
    |||||||||||   | |||||||||| | |||| |||||||||    
T  11553421 ttcatatacccgaatatattgaaactcttattattaatgaaat 11553463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 179
Target Start/End: Complemental strand, 11818589 - 11818445
Alignment:
Q  36 tttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttatt 134  Q
    |||||||||||| |||||||||||||| ||| | |||| || | ||| |||||   ||| ||||| |||||||| || || |||||||||   |||||||    
T  11818589 tttaccaactctagggtggagtttgttaggcgacaagcaaacgaggttgctcatgttcttgcaggagaagccacgttactagctagtcccgttatttatt 11818490  T
Q  135 ttcatatacccagttgtattgaaactttgattactaatgaaatgc 179  Q
    |||| ||||||| || ||||||| || | |||| |||||||||||    
T  11818489 ttcagatacccaattatattgaacctcttattattaatgaaatgc 11818445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 16206539 - 16206677
Alignment:
Q  42 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 140  Q
    |||||| |||||||||||||| ||| | |||| || ||||| |||||  |||| ||| |||| ||||| | | | ||||||||| |  |||||||| |||    
T  16206539 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaata 16206638  T
Q  141 tacccagttgtattgaaactttgattactaatgaaatgc 179  Q
    |||||| ||||||||||||| | ||||  ||||||||||    
T  16206639 tacccaattgtattgaaactcttattataaatgaaatgc 16206677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 23379917 - 23380005
Alignment:
Q  90 ctctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaatg 178  Q
    |||||||| | |||| |||||| || |||||| || |  |||||||| | ||||||| ||||||||||||| | |||| ||||||||||    
T  23379917 ctctcgcaagagaagtcacattactagctagttccgctgtttattttaaaatacccaattgtattgaaactattattattaatgaaatg 23380005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 6e-70; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 16678925 - 16678732
Alignment:
Q  1 tcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcagg 99  Q
    |||||||| |||||||||||||||||||||  ||||||||||||||||| |||||||||||||||| | ||  |||||||||||||||||||||||||||    
T  16678925 tcatcacggcttcccggtctttgctctcgtcaaagtttaccaactctcgcgtggagtttgttcggcgacaaattaatgtggtggctcacactctcgcagg 16678826  T
Q  100 ggaagccacatttctcgctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaatgcattaagcacttttc 193  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||  ||||||||||||    
T  16678825 ggaagccacatttctcgcttgtcccactatttattttcatatacccaattggattgaaactttgattactaatgaaatgctataagcacttttc 16678732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 47726227 - 47726415
Alignment:
Q  11 ttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagcta-----atgtggtggctcacactctcgcaggggaag 104  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| | ||||||     |||||||| ||||||||||||||||| |||    
T  47726227 ttcccggtctttgctctcgtccaagtttaccaactctcgagtggagtttgtttggcgacaagctattataatgtggtgtctcacactctcgcagggaaag 47726326  T
Q  105 ccacatttctcgctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaatgcattaagcacttttc 193  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||| ||||||||    
T  47726327 ccacatttctcgctagtcccactatttattttcatatacccaattgtattgaaactttgattactaatgaaatgctataaacacttttc 47726415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 47747533 - 47747721
Alignment:
Q  11 ttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagcta-----atgtggtggctcacactctcgcaggggaag 104  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| | ||||||     |||||||| ||||||||||||||||| |||    
T  47747533 ttcccggtctttgctctcgtccaagtttaccaactctcgagtggagtttgtttggcgacaagctattataatgtggtgtctcacactctcgcagggaaag 47747632  T
Q  105 ccacatttctcgctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaatgcattaagcacttttc 193  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||| ||||||||    
T  47747633 ccacatttctcgctagtcccactatttattttcatatacccaattgtattgaaactttgattactaatgaaatgctataaacacttttc 47747721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 192
Target Start/End: Complemental strand, 2002677 - 2002526
Alignment:
Q  42 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 140  Q
    ||||||||||||||||||||  ||  | |||| |||||||| ||||| ||||||||| | ||  |||||||||||||||||||    | |||||||  ||    
T  2002677 aactctcgggtggagtttgtcaggagacaagcaaatgtggttgctcatactctcgcatgagagaccacatttctcgctagtccagttacttattttatta 2002578  T
Q  141 tacccagttgtattgaaactttgattactaatgaaatgcattaagcactttt 192  Q
    |||| |||||||||||||||||||||| |||||| ||||  ||| |||||||    
T  2002577 tacctagttgtattgaaactttgattattaatgagatgctataaacactttt 2002526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 174
Target Start/End: Original strand, 30981259 - 30981359
Alignment:
Q  74 aatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatg 173  Q
    |||||||| ||||| |||||||||||  | | |||||||||||||||| ||   | |||||||  |||||||||||||||||||||||| |||| |||||    
T  30981259 aatgtggttgctcatactctcgcaggaaaggtcacatttctcgctagttccgttacttattttgttatacccagttgtattgaaactttaattattaatg 30981358  T
Q  174 a 174  Q
    |    
T  30981359 a 30981359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 34696282 - 34696110
Alignment:
Q  3 atcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcagggg 101  Q
    |||||| ||||||||  | | ||||| | |||||| | |||||||||||||||||||| | ||  | |||  |||||||| ||||| ||||||| ||| |    
T  34696282 atcacggcttcccggattcttctctcttccaagttcaacaactctcgggtggagtttgctaggagacaagaaaatgtggttgctcatactctcgaaggag 34696183  T
Q  102 aagccacatttctcgctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatga 174  Q
    |  |||| ||||| ||||||| |    |||||||||||||||||  |||||||||||||||||||| ||||||    
T  34696182 agaccacgtttctagctagtctcgttgtttattttcatataccccattgtattgaaactttgattattaatga 34696110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 179
Target Start/End: Original strand, 41117187 - 41117327
Alignment:
Q  40 ccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttca 138  Q
    ||||||||||||||||||||||| ||| | |||| |||| ||| |||||  |||| ||| | |||||||| || || |||||||||||  |||||||| |    
T  41117187 ccaactctcgggtggagtttgttaggcgacaagccaatgaggttgctcatgctcttgcaagagaagccacgttactagctagtcccaccgtttattttga 41117286  T
Q  139 tatacccagttgtattgaaactttgattactaatgaaatgc 179  Q
     ||||||| ||||||| ||||| | ||||  ||||||||||    
T  41117287 gatacccaattgtattcaaactattattatcaatgaaatgc 41117327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 5e-58; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 30141119 - 30140922
Alignment:
Q  1 tcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcagg 99  Q
    |||||||  |||||||||||||||| | || |||||||||||||||| |||||||||||||| ||| | ||||||||||||||| ||||||||| |||      
T  30141119 tcatcacagcttcccggtctttgcttttgtccaagtttaccaactctagggtggagtttgttaggcgacaagctaatgtggtggatcacactcttgcaaa 30141020  T
Q  100 ggaagccacatttctcgctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaatgcattaagcacttttccctc 197  Q
    ||||||||||||||||||||||||| | || |||||||||||||||| |||||||||||||||||||| |||||||||||  ||||||||||||||||    
T  30141019 ggaagccacatttctcgctagtcccgctatctattttcatatacccaattgtattgaaactttgattattaatgaaatgctataagcacttttccctc 30140922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 178
Target Start/End: Original strand, 16416595 - 16416738
Alignment:
Q  36 tttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttatt 134  Q
    |||||||||||| ||||| |||||||| ||| | |||  |||| ||| ||||  | ||| ||||| || | |||||| || ||||||| ||  |||||||    
T  16416595 tttaccaactctagggtgtagtttgttaggcgacaagtaaatgaggttgctcgtattcttgcaggagatgtcacattactagctagtctcattatttatt 16416694  T
Q  135 ttcatatacccagttgtattgaaactttgattactaatgaaatg 178  Q
    |||||||||||| |||||||||| || | |||| ||||||||||    
T  16416695 ttcatatacccaattgtattgaacctcttattattaatgaaatg 16416738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 187
Target Start/End: Complemental strand, 23508996 - 23508844
Alignment:
Q  36 tttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttatt 134  Q
    |||||||| ||| |||||||||||||| ||| | |||| |||| ||| |||||   ||| ||||| ||||||||||| |  |||||||||    |||| |    
T  23508996 tttaccaattctagggtggagtttgttaggcgacaagcaaatggggttgctcatgttcttgcaggagaagccacattacgagctagtcccgttgtttaat 23508897  T
Q  135 ttcatatacccagttgtattgaaactttgattactaatgaaatgcattaagca 187  Q
    |||| |||||   |||||||||| || | |||| |||||||||||| ||||||    
T  23508896 ttcacatacctgattgtattgaacctcttattattaatgaaatgcaataagca 23508844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 54027883 - 54027686
Alignment:
Q  1 tcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcagg 99  Q
    ||||||| |||||||||||||| |||| || |||||||||||||||| ||||||||||| || ||| | ||||||||||||||||||||||||| | |||    
T  54027883 tcatcacaacttcccggtctttactcttgtccaagtttaccaactctagggtggagttttttaggcgacaagctaatgtggtggctcacactcttgtagg 54027784  T
Q  100 ggaagccacatttctcgctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaatgcattaagcacttttccctc 197  Q
    |||||||||||||||||||| |||| | ||||||||||||||||||| || ||||||||||||||||| ||||||||||   ||||||| ||||||||    
T  54027783 ggaagccacatttctcgctactcccgctatttattttcatatacccaattatattgaaactttgattattaatgaaatgatataagcacatttccctc 54027686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 27066527 - 27066334
Alignment:
Q  1 tcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcagg 99  Q
    ||||||| ||||||||||||||||| | || |||||||||||||||| |||||||||||||| ||| | ||||||||||||||| ||||||||| |||      
T  27066527 tcatcacaacttcccggtctttgcttttgtccaagtttaccaactctagggtggagtttgttgggcgacaagctaatgtggtgggtcacactcttgcaaa 27066428  T
Q  100 ggaagccacatttctcgctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaatgcattaagcacttttc 193  Q
    ||||||||||||||||||||||||| | || ||||||||||||| || |||||||||||||||||||| |||||||||||  ||||||| ||||    
T  27066427 ggaagccacatttctcgctagtcccgctatctattttcatatactcaattgtattgaaactttgattattaatgaaatgctataagcacatttc 27066334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 12355183 - 12355379
Alignment:
Q  1 tcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcagg 99  Q
    |||||||  |||||||||| ||||| | || |||||||||||||||| |||||||||||||| ||| | ||| |||||||||||||||||||||  ||      
T  12355183 tcatcacagcttcccggtccttgcttttgtccaagtttaccaactctagggtggagtttgttaggcgacaaggtaatgtggtggctcacactcttccaaa 12355282  T
Q  100 ggaagccacatttctcgctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaatgcattaagcacttttccct 196  Q
    |||| |||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||    
T  12355283 ggaaaccacatttctcgctagtcccactatctattttcatatacccaattgtattgaaactttgattattaatgaaatgctttaagcacctttccct 12355379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 27087628 - 27087435
Alignment:
Q  1 tcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcagg 99  Q
    ||||||| |||| |||||||||||| | || |||||||||||||||| |||||||||||||| ||| | ||||||||||||||| ||||||||| |||      
T  27087628 tcatcacaactttccggtctttgcttttgtccaagtttaccaactctagggtggagtttgttaggcgacaagctaatgtggtgggtcacactcttgcaaa 27087529  T
Q  100 ggaagccacatttctcgctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaatgcattaagcacttttc 193  Q
    ||||||||||||||||||||||||| | || ||||||||||||| || |||||||||||||||||||| |||||||||||  ||||||| ||||    
T  27087528 ggaagccacatttctcgctagtcccgctatctattttcatatactcaattgtattgaaactttgattattaatgaaatgctataagcacatttc 27087435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 27066721 - 27066578
Alignment:
Q  1 tcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcagg 99  Q
    ||||||| |||| |||||||||||| | || |||||||||||||||| |||||||||||||| ||| | ||||||||||||||| ||||||||| |||      
T  27066721 tcatcacaactttccggtctttgcttttgtccaagtttaccaactctagggtggagtttgttaggcgacaagctaatgtggtgggtcacactcttgcaaa 27066622  T
Q  100 ggaagccacatttctcgctagtcccacaatttattttcatatac 143  Q
    ||||||||||||||||||||||||| | || |||||||||||||    
T  27066621 ggaagccacatttctcgctagtcccgctatctattttcatatac 27066578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 27066915 - 27066772
Alignment:
Q  1 tcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcagg 99  Q
    ||||||| |||| |||||||||||| | || |||||||||||||||| |||||||||||||| ||| | ||||||||||||||| ||||||||| |||      
T  27066915 tcatcacaactttccggtctttgcttttgtccaagtttaccaactctagggtggagtttgttaggcgacaagctaatgtggtgggtcacactcttgcaaa 27066816  T
Q  100 ggaagccacatttctcgctagtcccacaatttattttcatatac 143  Q
    ||||||||||||||||||||||||| | || |||||||||||||    
T  27066815 ggaagccacatttctcgctagtcccgctatctattttcatatac 27066772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 4462624 - 4462709
Alignment:
Q  93 tcgcaggggaagccacatttctcgctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaatg 178  Q
    ||||||| ||||||||||| ||  |||||||||||||||||||||||||| |    |||||||||||||| |||| |||| |||||    
T  4462624 tcgcaggagaagccacattactaactagtcccacaatttattttcatatatctgaatgtattgaaacttttattattaataaaatg 4462709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 188
Target Start/End: Original strand, 28860789 - 28860936
Alignment:
Q  42 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 140  Q
    ||||||||||||||||||||| ||| | |||| |||||||| ||||||||||||||  | || ||||||||  | |||||| ||  | |||||| |  ||    
T  28860789 aactctcgggtggagtttgttaggcgacaagccaatgtggtagctcacactctcgctagagaggccacattattagctagtgccgtagtttattatgcta 28860888  T
Q  141 tacccagttgtattgaaactttgattactaatgaaatgcattaagcac 188  Q
    ||| || |||||||||| |||||||||  ||||| ||||  |||||||    
T  28860889 tactcaattgtattgaatctttgattataaatgatatgctataagcac 28860936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 55227612 - 55227750
Alignment:
Q  42 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 140  Q
    |||||| |||||||||||||| ||| | || | || ||||| |||||  |||| ||| |||| ||||||| | | ||||||||| |  |||||||| |||    
T  55227612 aactctagggtggagtttgttaggcgacaaaccaacgtggttgctcatgctcttgcaagggaggccacatctttagctagtcccgccgtttattttaata 55227711  T
Q  141 tacccagttgtattgaaactttgattactaatgaaatgc 179  Q
    |||||| ||||||||||||| | ||||  ||||||||||    
T  55227712 tacccaattgtattgaaactcttattataaatgaaatgc 55227750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 16582403 - 16582340
Alignment:
Q  116 gctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaatgc 179  Q
    |||||||||||  |||||||| | ||||||||||||||||||||| | |||| |||||| ||||    
T  16582403 gctagtcccaccgtttattttgaaatacccagttgtattgaaactattattattaatgatatgc 16582340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 54823744 - 54823807
Alignment:
Q  116 gctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaatgc 179  Q
    ||||||||| |  |||||||| ||||||||| ||||||||||| ||| |||| |||||||||||    
T  54823744 gctagtcccgccgtttattttgatatacccaattgtattgaaatttttattattaatgaaatgc 54823807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 30859363 - 30859501
Alignment:
Q  42 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 140  Q
    |||||| |||||||||||||| ||| | |||| || ||||| |||||  |||| ||| |||| ||||| | | |  |||||||| |  |||||||| |||    
T  30859363 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttaactagtcccgccgtttattttaata 30859462  T
Q  141 tacccagttgtattgaaactttgattactaatgaaatgc 179  Q
    |||||| ||||||||||||| | ||||  ||||||||||    
T  30859463 tacccaattgtattgaaactcttattataaatgaaatgc 30859501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 5e-55; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 10 - 193
Target Start/End: Original strand, 26683445 - 26683629
Alignment:
Q  10 cttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccac 108  Q
    |||||| |||||||||||||| ||||||| |||||||||||||||||||||||| || | ||| ||||||||||||||| ||||| |||||||| |||||    
T  26683445 cttccccgtctttgctctcgtccaagttttccaactctcgggtggagtttgttccgcgacaagttaatgtggtggctcatactcttgcaggggaggccac 26683544  T
Q  109 atttctcgctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaatgcattaagcacttttc 193  Q
    |||||| ||||||||| | |||||||||||||||| ||||||||||||||||| ||||||||||||||| |  ||||||||||||    
T  26683545 atttcttgctagtcccgctatttattttcatatactcagttgtattgaaacttcgattactaatgaaattctataagcacttttc 26683629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 29755125 - 29754938
Alignment:
Q  10 cttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccac 108  Q
    |||||||||| ||||| | || |||||||||||||||| |||||||||||||| ||| | ||||||||||||||||||||||||| |||  | |||||||    
T  29755125 cttcccggtccttgcttttgtccaagtttaccaactctagggtggagtttgttaggcgacaagctaatgtggtggctcacactcttgcaaag-aagccac 29755027  T
Q  109 atttctcgctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaatgcattaagcacttttccctc 197  Q
    |||||||||||||||| | || |||||||||||||||| |||||||||||||||||||| |||||||||||  ||||||| ||||||||    
T  29755026 atttctcgctagtcccgctatctattttcatatacccaattgtattgaaactttgattattaatgaaatgctataagcacctttccctc 29754938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 5335390 - 5335212
Alignment:
Q  1 tcatcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggcat-aagctaatgtggtggctcacactctcgcagg 99  Q
    |||||||  |||||| ||||||| | | || |||||||||||||||| |||||||||||||| ||||  ||||||||||| ||||||||||||| |||      
T  5335390 tcatcacagcttcccagtctttgtttttgtccaagtttaccaactctagggtggagtttgttaggcaacaagctaatgtgttggctcacactcttgcaaa 5335291  T
Q  100 ggaagccacatttctcgctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaatg 178  Q
    ||||||||||||||||||||||| | | || |||||||||| | ||| || ||||||||||||||||| ||||||||||    
T  5335290 ggaagccacatttctcgctagtctcgctatctattttcataaatccaattatattgaaactttgattattaatgaaatg 5335212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 32 - 166
Target Start/End: Original strand, 40299892 - 40300027
Alignment:
Q  32 caagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatt 130  Q
    |||||| | |||||||||||||||||||||| ||| | |||| || ||||| ||||| ||||||| ||  || |||||||||||||||||| ||    ||    
T  40299892 caagttcaacaactctcgggtggagtttgttaggcgacaagcaaacgtggttgctcatactctcgtagaagaggccacatttctcgctagttccgttgtt 40299991  T
Q  131 tattttcatatacccagttgtattgaaactttgatt 166  Q
    ||||||||||||||   ||||||||| |||||||||    
T  40299992 tattttcatataccactttgtattgagactttgatt 40300027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 22864662 - 22864512
Alignment:
Q  18 tctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcg 116  Q
    |||||||| |||| |||||||||||||||||| ||| |||||||| ||| | || ||||| || ||||||| | |||||  |  || |||| |||| |||    
T  22864662 tctttgctttcgtccaagtttaccaactctcgagtgaagtttgttaggcaacaaactaatatgttggctcatattctcgtcgaagaggccatatttatcg 22864563  T
Q  117 ctagtcccacaatttattttcatatacccagttgtattgaaactttgatta 167  Q
    |||||||| | |||| |||| ||||||| | |||||||||||| |||||||    
T  22864562 ctagtcccgctatttgtttttatatacctaattgtattgaaacgttgatta 22864512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 23976592 - 23976684
Alignment:
Q  104 gccacatttctcgctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaatgcattaagcacttttccct 196  Q
    ||||||||||||| |||||||   | |||||||  |||||| || ||||||||||||||||||| |||||| ||||  |||||||||||||||    
T  23976592 gccacatttctcgttagtcccgttacttattttattatacctagatgtattgaaactttgattattaatgatatgctataagcacttttccct 23976684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 179
Target Start/End: Original strand, 36044911 - 36045055
Alignment:
Q  36 tttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttatt 134  Q
    |||||||||||| | ||| |||||||| ||| | |||| |||| ||| ||||| | ||| | ||| ||||||||||| || ||||||||||| |||||||    
T  36044911 tttaccaactctagagtgaagtttgttaggcgacaagccaatgaggttgctcatattcttgtaggagaagccacattactagctagtcccaccatttatt 36045010  T
Q  135 ttcatatacccagttgtattgaaactttgattactaatgaaatgc 179  Q
    ||||||| |||   ||||||||| || | |||| |||||||||||    
T  36045011 ttcatatgcccgaatgtattgaatctcttattattaatgaaatgc 36045055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 22292379 - 22292517
Alignment:
Q  42 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 140  Q
    |||||| |||||||||||||| ||| | |||| || ||||| |||||  |||| ||| |||| ||||| | | | ||||||||| |  |||||||| |||    
T  22292379 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatgctcttgcaagggaggccacgtctttagctagtcccgccgtttattttaata 22292478  T
Q  141 tacccagttgtattgaaactttgattactaatgaaatgc 179  Q
    |||||| ||||||||||||| | ||||  ||||||||||    
T  22292479 tacccaattgtattgaaactcttattataaatgaaatgc 22292517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 179
Target Start/End: Original strand, 27493251 - 27493391
Alignment:
Q  40 ccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttca 138  Q
    ||||||||| |||||||||||||  || | |||| ||||| |  ||||| ||||||||||  || ||||| ||  | ||||||||| || |||||| |      
T  27493251 ccaactctcaggtggagtttgttaagcgacaagccaatgtagcagctcatactctcgcagaagaggccacgttattagctagtcccgcagtttattatgt 27493350  T
Q  139 tatacccagttgtattgaaactttgattactaatgaaatgc 179  Q
    |||||||| |||||||||| |||||||||  ||||||||||    
T  27493351 tatacccaattgtattgaatctttgattataaatgaaatgc 27493391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 13948841 - 13948782
Alignment:
Q  129 tttattttcatatacccagttgtattgaaactttgattactaatgaaatgcattaagcac 188  Q
    |||||||||||||||||  |||||||||||||||||||| || ||| ||||  |||||||    
T  13948841 tttattttcatataccctattgtattgaaactttgattattattgatatgctataagcac 13948782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 196
Target Start/End: Original strand, 18759803 - 18759870
Alignment:
Q  129 tttattttcatatacccagttgtattgaaactttgattactaatgaaatgcattaagcacttttccct 196  Q
    |||||||| ||||||||| || |||||||||||| |||| |||||||||||  ||||||  |||||||    
T  18759803 tttattttgatatacccaattatattgaaacttttattattaatgaaatgctataagcatgtttccct 18759870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1964 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold1964
Description:

Target: scaffold1964; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 1073 - 1202
Alignment:
Q  3 atcacgacttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcagggg 101  Q
    |||||| ||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  1073 atcacggctttccagtctttgctctcgtccaagtttaccaactctcgggtggagtttgttcggcgacaagctaatgtggtggctcacactctcgcagggg 1172  T
Q  102 aagccacatttctcgctagtcccacaattt 131  Q
    |||||||||||||||||||| |||| ||||    
T  1173 aagccacatttctcgctagttccactattt 1202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0643 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 1018 - 1201
Alignment:
Q  12 tcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacat 110  Q
    ||||||||| |||| | || |||||||||||||||| |||||||||||||| ||| | || |||||||||||||||||| |||  || ||||||||||||    
T  1018 tcccggtctatgcttttgtccaagtttaccaactctagggtggagtttgttaggcgacaaactaatgtggtggctcacaatcttacaagggaagccacat 1117  T
Q  111 ttctcgctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaatgcattaagcacttttcc 194  Q
    |||||||||||||| | ||||||||||||||||||| ||||||||||  |||||||| |||||||||||  ||||||| |||||    
T  1118 ttctcgctagtcccgctatttattttcatatacccaattgtattgaatgtttgattattaatgaaatgctataagcacctttcc 1201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 12370956 - 12370776
Alignment:
Q  11 ttcccggtctttgctctcgttcaagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccaca 109  Q
    |||||| |||||| | | || ||||||| ||||||||| |||||||||| |||||| | |||||||||||||| |||| ||||| |||||||| ||||||    
T  12370956 ttcccgatctttgtttttgtccaagtttgccaactctctggtggagtttattcggcgacaagctaatgtggtgactcatactcttgcaggggaggccaca 12370857  T
Q  110 tttctcgctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaatgcattaagcactt 190  Q
    ||||| ||||||||  | ||||||||||||||| ||| ||||||||||||||||||||||||| ||||||  |||||||||    
T  12370856 tttcttgctagtcctgctatttattttcatatatccaattgtattgaaactttgattactaataaaatgctataagcactt 12370776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 12749485 - 12749548
Alignment:
Q  104 gccacatttctcgctagtcccacaatttattttcatatacccagttgtattgaaactttgatta 167  Q
    |||||||||||||||||||||   |||||||||||| |||| | ||||||||||||||||||||    
T  12749485 gccacatttctcgctagtcccgttatttattttcatgtacctaattgtattgaaactttgatta 12749548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 192
Target Start/End: Complemental strand, 18765733 - 18765582
Alignment:
Q  42 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 140  Q
    ||||||||||||||||||||| ||| | |||| ||| |||| ||||| ||||||||  | || ||||||||  | |||||| ||  |||||||| |  ||    
T  18765733 aactctcgggtggagtttgttaggcgacaagccaatttggtagctcatactctcgctagagaggccacattaatagctagtgccgtaatttattatgtta 18765634  T
Q  141 tacccagttgtattgaaactttgattactaatgaaatgcattaagcactttt 192  Q
    |||||| |||||||||| |||  ||||  ||||||||||  |||||||||||    
T  18765633 tacccaattgtattgaatcttctattataaatgaaatgctataagcactttt 18765582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 42 - 179
Target Start/End: Complemental strand, 6006175 - 6006037
Alignment:
Q  42 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 140  Q
    |||||| |||||||||||||| ||| | |||| || |||||  ||||  |||| ||| |||||||||| | | | ||||||||| |  |||||||| |||    
T  6006175 aactctagggtggagtttgttaggcgacaagccaacgtggtttctcatgctcttgcaagggaagccacgtctttagctagtcccgccgtttattttaata 6006076  T
Q  141 tacccagttgtattgaaactttgattactaatgaaatgc 179  Q
    |||||| ||||||||||||| | ||||  ||||||||||    
T  6006075 tacccaattgtattgaaactcttattataaatgaaatgc 6006037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 31935315 - 31935395
Alignment:
Q  116 gctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaatgcattaagcacttttccct 196  Q
    ||||||||| |  |||||| | ||||||||| |||||||||| ||||||| | |||||||||||  ||||||| |||||||    
T  31935315 gctagtcccgccgtttattatgatatacccaattgtattgaatctttgatgattaatgaaatgctctaagcacgtttccct 31935395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 36144802 - 36144864
Alignment:
Q  117 ctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaatgc 179  Q
    |||||||||| ||||||||||||||||||  |||||||||| || |  ||| |||||||||||    
T  36144802 ctagtcccactatttattttcatatacccgattgtattgaacctcttgttattaatgaaatgc 36144864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 36 - 196
Target Start/End: Complemental strand, 449 - 288
Alignment:
Q  36 tttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttatt 134  Q
    ||||||||||||||||| ||||||| ||| | ||||||||||||||||| ||| ||||| | ||||||   ||||||||| |||||| || | |||||||    
T  449 tttaccaactctcgggtagagtttgctcgacgataagctaatgtggtggttcatactcttgaaggggagatcacatttcttgctagttccgctatttatt 350  T
Q  135 ttcatatacccagttgtattgaaactttgattactaatgaaatgcattaagcacttttccct 196  Q
    |||||||||||| |||||||||| |||||||||||||||||||    |||||||||||||||    
T  349 ttcatatacccaattgtattgaagctttgattactaatgaaatattataagcacttttccct 288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 36 - 179
Target Start/End: Original strand, 48770106 - 48770250
Alignment:
Q  36 tttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttatt 134  Q
    |||||||||||| ||||||||||| |||||| | ||||||||| ||| |||||   ||||||||| ||||||||||| |  ||||||||||| |||||||    
T  48770106 tttaccaactctagggtggagtttattcggcgagaagctaatgaggttgctcatgttctcgcaggagaagccacattacaagctagtcccaccatttatt 48770205  T
Q  135 ttcatatacccagttgtattgaaactttgattactaatgaaatgc 179  Q
    |||||||||||   |||||||||||| | |||| |||||||||||    
T  48770206 ttcatatacccgaatgtattgaaactcttattattaatgaaatgc 48770250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 32480215 - 32480353
Alignment:
Q  42 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 140  Q
    |||||| |||||||||||||| ||| | |||| || ||||| ||||| ||||| ||| |||| ||||| | | | ||||||||| || |||||||| |||    
T  32480215 aactctagggtggagtttgttaggcgacaagccaacgtggttgctcatactcttgcaagggaggccacgtctttagctagtcccgcagtttattttaata 32480314  T
Q  141 tacccagttgtattgaaactttgattactaatgaaatgc 179  Q
    ||| || ||||||||||||| | |||| |||||||||||    
T  32480315 tactcaattgtattgaaactcttattattaatgaaatgc 32480353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 179
Target Start/End: Original strand, 15633227 - 15633367
Alignment:
Q  40 ccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttca 138  Q
    ||||||||||||||||||||||| ||| | |||| |||| ||| ||||| ||||| ||| | |||||||| || || |||||||||    |||| ||| |    
T  15633227 ccaactctcgggtggagtttgttaggcgacaagccaatgaggttgctcatactcttgcaagagaagccacgttactagctagtcccgttgtttactttga 15633326  T
Q  139 tatacccagttgtattgaaactttgattactaatgaaatgc 179  Q
     ||||||| ||||||||||||| | ||||  ||||||||||    
T  15633327 aatacccaattgtattgaaactattattatcaatgaaatgc 15633367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 27810590 - 27810672
Alignment:
Q  95 gcaggggaagccacatttctcgctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaat 177  Q
    |||||||| |||||||| || ||||||| | |  |||||||| ||||||||||||||||||||||| | ||||  ||||||||    
T  27810590 gcaggggaggccacattccttgctagtctcgctgtttattttaatatacccagttgtattgaaactattattataaatgaaat 27810672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 30502581 - 30502643
Alignment:
Q  116 gctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaatg 178  Q
    ||||||||| || |||||||| ||||||||  ||||||||||||| | |||| ||||||||||    
T  30502581 gctagtcccgcagtttattttgatatacccgattgtattgaaactcttattattaatgaaatg 30502643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 3896540 - 3896621
Alignment:
Q  116 gctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaatgcattaagcacttttccctc 197  Q
    ||||||||| |  |||||||| ||||||||  ||||||||||||| | |||| |||||||||||  ||||||  ||||||||    
T  3896540 gctagtcccgccgtttattttgatatacccgattgtattgaaactcttattattaatgaaatgctataagcatgtttccctc 3896621  T

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Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 174
Target Start/End: Complemental strand, 73488 - 73345
Alignment:
Q  32 caagtttaccaactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatt 130  Q
    |||||| | |||||||||||||||||||| |  |  | |||| |||||||| ||| | || |||||||| ||  |||| ||||| |||||||||    ||    
T  73488 caagttcaacaactctcgggtggagtttgctaagagacaagcaaatgtggttgctgatacactcgcaggagagaccacgtttctagctagtcccgttgtt 73389  T
Q  131 tattttcatatacccagttgtattgaaactttgattactaatga 174  Q
    || ||| ||||||||| |||||||||||||||||||| ||||||    
T  73388 tacttttatatacccaattgtattgaaactttgattattaatga 73345  T

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Target: scaffold0303 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 188
Target Start/End: Original strand, 14197 - 14344
Alignment:
Q  42 aactctcgggtggagtttgttcggc-ataagctaatgtggtggctcacactctcgcaggggaagccacatttctcgctagtcccacaatttattttcata 140  Q
    ||||||||||||||||||||| ||| | |||| |||||||| ||||||||| || |  | || ||||||||  | |||||| ||  | |||||| || ||    
T  14197 aactctcgggtggagtttgttaggcgacaagccaatgtggtagctcacactgtccctagagaggccacattattagctagtgccgtagtttattatccta 14296  T
Q  141 tacccagttgtattgaaactttgattactaatgaaatgcattaagcac 188  Q
    |||||| |||||||||| ||| ||||   ||||||||||  |||||||    
T  14297 tacccaattgtattgaatcttcgattgtaaatgaaatgctataagcac 14344  T

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Target: scaffold0789 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0789
Description:

Target: scaffold0789; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 4281 - 4201
Alignment:
Q  116 gctagtcccacaatttattttcatatacccagttgtattgaaactttgattactaatgaaatgcattaagcacttttccct 196  Q
    ||||||||| | ||||| | | ||||||||| ||||||||||||| | ||||  ||||||||||  ||||||| |||||||    
T  4281 gctagtcccgccatttaatatgatatacccacttgtattgaaactattattatcaatgaaatgctataagcacgtttccct 4201  T

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