View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12952_low_8 (Length: 674)
Name: NF12952_low_8
Description: NF12952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12952_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 341 - 662
Target Start/End: Original strand, 30620210 - 30620529
Alignment:
| Q |
341 |
atgatgcgattacttcatatttgaacattaataaggtgtttcacactcttttggagctataatgtttacactcgttaatgagtatgggttggatgaaaaa |
440 |
Q |
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| T |
30620210 |
atgacgcgattacttcatatttgaacatcaataaggtgattcacacttttttgaagctataatgtttacactcgttaatgagtatgggttggatgaaaaa |
30620309 |
T |
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| Q |
441 |
tcaagacggagtatgtgttataaagataaatatgataatctcatagttggttgtgaaaattcaactctttttgacacatatgatttaggaatgtcaataa |
540 |
Q |
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| T |
30620310 |
tcaagacgaaatatgtgttataaagataaatatgataatctcatagttggttgtgaaaattcaactctttttgacac--atgatttaggaatgtcaacaa |
30620407 |
T |
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| Q |
541 |
ggcggggcaagagtatttttctaccctctttcccgtcatttaaaatgtttctcattcttgtagcccctattacccgccacaaagagtactctctccccat |
640 |
Q |
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| T |
30620408 |
ggcagggcaagagtatttttctaccctctttcccgtcatttaaaatgtttctcattcttgtagaccctattacccgccacaaagagtactctctccccat |
30620507 |
T |
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| Q |
641 |
cttcattttcacggtttccctt |
662 |
Q |
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| T |
30620508 |
cttcattttcacggtttccctt |
30620529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 30619912 - 30620209
Alignment:
| Q |
19 |
aggacttaattaggacaagactatagtgtgagataattaattattcttggaatattaatacatatcaaacnnnnnnnaatgatataaataaatgttaatc |
118 |
Q |
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| T |
30619912 |
aggacttaattaggacaagactatagtgtgagataattaattattcttggaatattaatacatatcaaactttttttaatgatataaataaatgttaatc |
30620011 |
T |
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| Q |
119 |
atctagcaacaaagtactcagagagtcgttgacatgactctttttaaaacaacacaagtttgattcctatatgtcattcatttgagaacgagtccaacac |
218 |
Q |
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| T |
30620012 |
atctagcaataaagtattcagagagtcgttgacatgactctttttaaaataacacgagtttgattcttatatgtcatccatttgagagtcaatccaacac |
30620111 |
T |
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| Q |
219 |
tcgttgttgactaacaaattagtcccata----gcatgtctaatgattctaagttgtgatgatatcttagaacatttaatagaagtcaaatatcgtaatt |
314 |
Q |
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| T |
30620112 |
tcgttgttgac--acaaattagtcccatagcatgcatgtctaatgattctaagttgtgatgatatcttagaacatttaatagaagtcaaatatcctaatt |
30620209 |
T |
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