View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12953_high_15 (Length: 392)
Name: NF12953_high_15
Description: NF12953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12953_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 387
Target Start/End: Complemental strand, 613605 - 613215
Alignment:
| Q |
19 |
gggtataggttgccaatttagtctgcttttaattttcttatgaagtaagagaatgagaaagatcaatcgaccaaagatgaggcattaacctttactatct |
118 |
Q |
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| T |
613605 |
gggtataggttgccaatttagtctgcttttaattttcttatgaagtaagagaatgagaaagatcaatcgaccaaagatgaggcattaacctttactatct |
613506 |
T |
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| Q |
119 |
aaaaaacttgtttaagattcattggttaagcttagacgaa--tggcaaagtgatgtccttataatt-agtggagaatca---------------tatggc |
200 |
Q |
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| T |
613505 |
aaaaaacttgtttaagattcattggttaagcttagacgacggtgtcaaagtgatgtccttataatttagtggagaatcactcatttccttttcatatggc |
613406 |
T |
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| Q |
201 |
ttttgcttttgtacatgtctttacgagatatccgtacatattagggtagtggctgggccagactttcctcctttggatatgaagagaagagatgccttgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
613405 |
ttttgcttttgtacatgtctttacgagatatccgtacatattagggtagtggctgggccagactttcctcctttgggtatgaagagaagagatgccttgt |
613306 |
T |
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| Q |
301 |
ttggaaaataataaatatgcaaaacactaatccaactgcaatca----tcgagctgtaataatactatatcgatgatcatgtgctaattct |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
613305 |
ttggaaaataataaatatgcaaaacactaatccaactgcaatcatcgatcgagctgtaataatactatatcgatgatcatgtgctaattct |
613215 |
T |
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