View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12953_high_17 (Length: 295)
Name: NF12953_high_17
Description: NF12953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12953_high_17 |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 36 - 280
Target Start/End: Complemental strand, 14132416 - 14132175
Alignment:
| Q |
36 |
ctaagagatcaaatcgattcctaattttatatttatatattaatgatttagctaacaactactctccagctgtgaggaacccgcaggcagaaatttctgc |
135 |
Q |
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| T |
14132416 |
ctaagagatcaaatcgattcctaattttatatttatatatttatgatttagctaacaactac-ccccagctgtgaggaacccgcaagcagaaatttctgc |
14132318 |
T |
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| Q |
136 |
tcataacagttcaggtatgacagttagcttggagcagggaaggaattctgctattcccacagatgtagcagcaggtgcgggcagttccagcactggacag |
235 |
Q |
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|||||||||| ||| ||||||||||||||| ||||| |||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||| | ||| |
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| T |
14132317 |
tcataacagtccagatatgacagttagctt-gagcacggaaggaattcttctattctcacggatgtagcagcaggtgcgggcagttccagcact-gccag |
14132220 |
T |
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| Q |
236 |
tctcgctggcagccaccgtcgcgaggtagagtgaagtgtaatata |
280 |
Q |
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| T |
14132219 |
tctcgctggcatccaccgtcgcgaggtagagtgaagtgtaatata |
14132175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 84 - 280
Target Start/End: Complemental strand, 267629 - 267431
Alignment:
| Q |
84 |
tagctaacaactactctccagctgtgaggaacccgcaggcagaaatttct--gctcataacagttcaggtatgacagttagcttggagcagggaaggaat |
181 |
Q |
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| T |
267629 |
tagctaacaactactccccagctgtgaggaacccgcaagcaattttttttttgctcataatagttcaggtatgacagttagcttggagcagggaaggaat |
267530 |
T |
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| Q |
182 |
tctgctattcccacagatgtagcagcaggtgcgggcagttccagcactggacagtctcgctggcagccaccgtcgcgaggtagagtgaagtgtaatata |
280 |
Q |
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| T |
267529 |
tctactattcccacggatgtagcagcaggtgcgggcagttccagcactagacagtctcgctggcagccaccgtcgcgaggtagagtgaagtgtaatata |
267431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 84 - 243
Target Start/End: Complemental strand, 12308 - 12149
Alignment:
| Q |
84 |
tagctaacaactactctccagctgtgaggaacccgcaggcagaaatttctgctcataacagttcaggtatgacagttagcttggagcagggaaggaattc |
183 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12308 |
tagctaacaactactccccagctgtgaggaacccgcaggcaaaaatttctactcataacagttcaggtatgacagttagcttggagcagggaaggaattc |
12209 |
T |
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| Q |
184 |
tgctattcccacagatgtagcagcaggtgcgggcagttccagcactggacagtctcgctg |
243 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12208 |
tgctattcccacggatgtagcagcaggtgtgggcagttccagcactggacagtctcgctg |
12149 |
T |
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