View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12953_high_2 (Length: 858)
Name: NF12953_high_2
Description: NF12953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12953_high_2 |
 | |
|
| [»] scaffold0009 (2 HSPs) |
| | |
|
| [»] scaffold0394 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 625; Significance: 0; HSPs: 17)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 31 - 847
Target Start/End: Complemental strand, 28949236 - 28948426
Alignment:
| Q |
31 |
taagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgtc |
128 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| | || | ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28949236 |
taagctaggatgtactatgaattaagaagtaatctaggaagtaatagtaactatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgtc |
28949137 |
T |
|
| Q |
129 |
tttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaactatg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28949136 |
tttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaaaaagtgctagtaactatg |
28949037 |
T |
|
| Q |
229 |
aagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttggttcacttat |
328 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28949036 |
aagtactcttatgaagtacaaataacttatgtaatgtttctatcccttaatgaaagcttatgttgtgtgataattatgctcgtatttttggttcacttat |
28948937 |
T |
|
| Q |
329 |
gttgnnnnnnngcttcggatttgttgttctcttatcctccataaactctatatttcagttttaactagttatatataagctatatttgcaatgccatgat |
428 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28948936 |
gttgtttttttgcttcggatttgttgttcacttatcctccttaaactctatatttcagttttaactagttatatataagctatatttgtaatgccatgat |
28948837 |
T |
|
| Q |
429 |
ttcttatgttttttgtgacattcaaagcatgtttcttatggttttgcggctggtttggttgcgacttcaggtgctgttcctggcctgctaacctgctacg |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28948836 |
ttcttatgttttttgtgacattcaaagcatgtttcttatggttttgcggctggtttggttgcggcttcagctgctgttcctggcctgctaacctgctacg |
28948737 |
T |
|
| Q |
529 |
gctgggggtagttttttggccaagggcctggttggtttttgttgtctctgtaattgctttctagactttctaggcnnnnnnnnatgttaactggactgcc |
628 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28948736 |
gttgggggtagttttttggccaagggcctggttggttttgtttgtctctgtaattgctttctagactttctagg-atttttttatgttaactggactgcc |
28948638 |
T |
|
| Q |
629 |
tcttccttctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcagtaatgaggtattt |
728 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28948637 |
tcttccttctggtgtttcggtttgcaaacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcaataatgaggtattc |
28948538 |
T |
|
| Q |
729 |
aattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatgcctaaattc |
828 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28948537 |
aattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatgcctaaattc |
28948445 |
T |
|
| Q |
829 |
acaattaagacacaggttc |
847 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
28948444 |
acaattaagacacaggttc |
28948426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 31 - 847
Target Start/End: Original strand, 22990246 - 22991047
Alignment:
| Q |
31 |
taagctaggaagtactatgaattaagaagtaatctaagctaggat--gta-ctatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgt |
127 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||| | || || ||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22990246 |
taagataggatgtactatgaattaagaagtaatctagga-agtattagtaactatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgt |
22990344 |
T |
|
| Q |
128 |
ctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaactat |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22990345 |
ctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaactat |
22990444 |
T |
|
| Q |
228 |
gaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttggttcactta |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22990445 |
gaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaatgaaagcttatgttgtgtgataattatgctcgtatttttggttcactta |
22990544 |
T |
|
| Q |
328 |
tgttgnnnnnnngcttcggatttgttgttctcttatcctccataaactctatatttcagttttaactagttatatataagctatatttgcaatgccatga |
427 |
Q |
| |
|
| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22990545 |
ttttgtttttttgcttcggatttgttgttcacttatcctccataaactctatatttcagttttaactagttatatataagctatatttgcaatgccatga |
22990644 |
T |
|
| Q |
428 |
tttcttatgttttttgtgacattcaaagcatgtttcttatggttttgcggctggtttggttgcgacttcaggtgctgttcctggcctgctaacctgctac |
527 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22990645 |
tttcttatgttttttgtaacattcaaagcatgtttcttatggttttgcggctggtttggttgcggcttcaggtgctgttcctggcctgctaacctgctac |
22990744 |
T |
|
| Q |
528 |
ggctgggggtagttttttggccaagggcctggttggtttttgttgtctctgtaattgctttctagactttctaggcnnnnnnnnatgttaactggactgc |
627 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||| | |||||||||||||||| |
|
|
| T |
22990745 |
ggctgggggtagttttttggccaagggtctggttggtttttgttgtctctgtagttgctttctaggcttttt----------ttatgttaactggactgc |
22990834 |
T |
|
| Q |
628 |
ctcttccttctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcagtaatgaggtatt |
727 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
22990835 |
ctcttccttctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcaataatgaggtatt |
22990934 |
T |
|
| Q |
728 |
taattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatgcctaaatt |
827 |
Q |
| |
|
||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22990935 |
caattattatcactcaagtttaaggtgcccaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatgcctaaatt |
22991027 |
T |
|
| Q |
828 |
cacaattaagacacaggttc |
847 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
22991028 |
cacaattatgacacaggttc |
22991047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 31 - 451
Target Start/End: Complemental strand, 22714979 - 22714557
Alignment:
| Q |
31 |
taagctaggaagtactatgaattaagaagtaatctaagctaggat--gta-ctatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgt |
127 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||| | || || ||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22714979 |
taagataggatgtactatgaattaagaagtaatctagga-agtattagtaactatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgt |
22714881 |
T |
|
| Q |
128 |
ctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaactat |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22714880 |
ctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaaaaagtgctagtaactat |
22714781 |
T |
|
| Q |
228 |
gaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttggttcactta |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22714780 |
gaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaatgaaagcttatgttgtgtgataattatgctcgtatttttggttcactta |
22714681 |
T |
|
| Q |
328 |
tgttgnnnnnnngcttcggatttgttgttctcttatcctccataaactctatatttcagttttaactagttatatataagctatatttgcaatgccatga |
427 |
Q |
| |
|
| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22714680 |
ttttgtttttttgcttcggatttgttgttcacttatcctccataaactctatatttcagttttaactagttatatataagctatatttgcaatgccatga |
22714581 |
T |
|
| Q |
428 |
tttcttatgttttttgtgacattc |
451 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
22714580 |
tttcttatgttttttgtaacattc |
22714557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 446 - 847
Target Start/End: Complemental strand, 22703454 - 22703070
Alignment:
| Q |
446 |
acattcaaagcatgtttcttatggttttgcggctggtttggttgcgacttcaggtgctgttcctggcctgctaacctgctacggctgggggtagtttttt |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22703454 |
acattcaaagcatgtttcttatggttttgcggctggtttggttgcggcttcaggtgctgttcctggcctgctaacctgctacggctgggggtagtttttt |
22703355 |
T |
|
| Q |
546 |
ggccaagggcctggttggtttttgttgtctctgtaattgctttctagactttctaggcnnnnnnnnatgttaactggactgcctcttccttctggtgttt |
645 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||| |||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
22703354 |
ggccaagggtctggttggtttttgttgtctctgtagttgctttctaggcttttt----------ttatgttaactggactgcctcttccttctggtgttt |
22703265 |
T |
|
| Q |
646 |
cggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcagtaatgaggtatttaattattatcacttaag |
745 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||| |
|
|
| T |
22703264 |
cggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcaataatgaggtattcaattattatcactcaag |
22703165 |
T |
|
| Q |
746 |
tgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatgcctaaattcacaattaagacacaggt |
845 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22703164 |
tttaaggtgcccaatagaaagaacttttggtgtatggaagaatagatttgc-------aattctacgacgcatgcctaaattcacaattatgacacaggt |
22703072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 26 - 332
Target Start/End: Original strand, 22696864 - 22697172
Alignment:
| Q |
26 |
ggaagtaagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccg |
123 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||| | || | ||||||||||| | || |||||||||||||||||||||||| || | |
|
|
| T |
22696864 |
ggaattaacctaggaagtactatgaattaagaagtaatctacgaagtactagtaactatgaagtactattttgtttagtctttaatgttgtaatgctctg |
22696963 |
T |
|
| Q |
124 |
ttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaa |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22696964 |
ttgtctttaaattaagaagtaatctaggaagtaccggtaactttgaagtactgttatgtttttcctttcaattaggaagtaatctaagaagtggtagtaa |
22697063 |
T |
|
| Q |
224 |
ctatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttggttca |
323 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22697064 |
ctatgaagtactcttatgaagtactagtaacttatgtaatgtttctatcccttaatgaagacttatgttgtgtgataattatgctcgtatttatggttca |
22697163 |
T |
|
| Q |
324 |
cttatgttg |
332 |
Q |
| |
|
||||||||| |
|
|
| T |
22697164 |
cttatgttg |
22697172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 11 - 332
Target Start/End: Original strand, 46956533 - 46956859
Alignment:
| Q |
11 |
gaacctgtgtgactaggaagtaagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtt---tagtctt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | || | ||||||||| | |||||| || ||||||| |
|
|
| T |
46956533 |
gaacctgtgtgactaggaagtaagctagaaagtactatgaattaagaagtaatctaggaagtactagtaactatgaagcactgttatattatttagtctt |
46956632 |
T |
|
| Q |
106 |
taatgttgtaatgttccgttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaa |
205 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
46956633 |
taatgttgtaatgttccattatctttaaattaagaagtaatctaggaagtactagtaactatcaagtactgttatgttttgccttttaattaggaagtaa |
46956732 |
T |
|
| Q |
206 |
tctaagaagtgctagtaactatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||| |
|
|
| T |
46956733 |
tctaagaagtgctagtaactatgaagtactattatgaagtactagtaacttatgtaatgtttctataccttaatgaaggcttatgttgtgtgataattat |
46956832 |
T |
|
| Q |
306 |
gctcgtatttttggttcacttatgttg |
332 |
Q |
| |
|
||| |||||||| |||||||||||||| |
|
|
| T |
46956833 |
gcttgtattttttgttcacttatgttg |
46956859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 720 - 842
Target Start/End: Original strand, 22698733 - 22698848
Alignment:
| Q |
720 |
gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg |
819 |
Q |
| |
|
|||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22698733 |
gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg |
22698825 |
T |
|
| Q |
820 |
cctaaattcacaattaagacaca |
842 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
22698826 |
cctaaattcacaattaagacaca |
22698848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 720 - 842
Target Start/End: Complemental strand, 22981797 - 22981682
Alignment:
| Q |
720 |
gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg |
819 |
Q |
| |
|
|||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22981797 |
gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgc-------aattctacgacgcatg |
22981705 |
T |
|
| Q |
820 |
cctaaattcacaattaagacaca |
842 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
22981704 |
cctaaattcacaattaagacaca |
22981682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 720 - 842
Target Start/End: Complemental strand, 22995384 - 22995269
Alignment:
| Q |
720 |
gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg |
819 |
Q |
| |
|
|||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22995384 |
gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgc-------aattctacgacgcatg |
22995292 |
T |
|
| Q |
820 |
cctaaattcacaattaagacaca |
842 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
22995291 |
cctaaattcacaattaagacaca |
22995269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 716 - 799
Target Start/End: Original strand, 56560508 - 56560591
Alignment:
| Q |
716 |
taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat |
799 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
56560508 |
taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat |
56560591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 28949290 - 28949216
Alignment:
| Q |
11 |
gaacctgtgtgactaggaagtaagctaggaagtactatgaattaagaagtaatctaagctaggatgtactatgaa |
85 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
28949290 |
gaacctatgtgactaggaagtaagctaggaagtactatgagttaagaagcaatctaagctaggatgtactatgaa |
28949216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 716 - 799
Target Start/End: Complemental strand, 24036297 - 24036214
Alignment:
| Q |
716 |
taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat |
799 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
24036297 |
taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat |
24036214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 22715033 - 22714959
Alignment:
| Q |
11 |
gaacctgtgtgactaggaagtaagctaggaagtactatgaattaagaagtaatctaagctaggatgtactatgaa |
85 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22715033 |
gaacctctgtgattaggaagtaagttaggaagtactatgaattaagaagtaatctaagataggatgtactatgaa |
22714959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 22990192 - 22990266
Alignment:
| Q |
11 |
gaacctgtgtgactaggaagtaagctaggaagtactatgaattaagaagtaatctaagctaggatgtactatgaa |
85 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22990192 |
gaacctctgtgattaggaagtaagttaggaagtactatgaattaagaagtaatctaagataggatgtactatgaa |
22990266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 716 - 800
Target Start/End: Original strand, 16565539 - 16565623
Alignment:
| Q |
716 |
taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt |
800 |
Q |
| |
|
|||||| ||| | ||||| ||||||| |||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16565539 |
taatgaagtaatcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt |
16565623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 716 - 800
Target Start/End: Original strand, 15618844 - 15618928
Alignment:
| Q |
716 |
taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt |
800 |
Q |
| |
|
|||||| ||||| ||||| ||||||| |||| || | |||||||| |||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
15618844 |
taatgaagtattcaattactatcactcaagtttaggatgcacaattgaaaaaacttttggggtatggaagaatagatttgcaatt |
15618928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 750 - 795
Target Start/End: Complemental strand, 52057042 - 52056997
Alignment:
| Q |
750 |
aggtgcacaatagaaagaacttttggtgtatggaagaatagatttg |
795 |
Q |
| |
|
|||||||||||||||| ||||||| | ||||||||||| ||||||| |
|
|
| T |
52057042 |
aggtgcacaatagaaataacttttagggtatggaagaacagatttg |
52056997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 603; Significance: 0; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 31 - 847
Target Start/End: Complemental strand, 200862 - 200042
Alignment:
| Q |
31 |
taagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgtc |
128 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| | || | ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
200862 |
taagctaggatgtactatgaattaagaagtaatctaggaagtaatagtaactatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgtc |
200763 |
T |
|
| Q |
129 |
tttaaattaagaagtaatctaggaagtacctgtaactatgaagtact----------gttatgttttgcctttcaattaggaagtaatctaagaagtgct |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
200762 |
tttaaattaagaagtaatctaggaagtacctgtaactatgaagtactatgaagtactgttatgtttttcctttcaattaggaattaatctaagaagtgct |
200663 |
T |
|
| Q |
219 |
agtaactatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
200662 |
agtaactatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaatgaaagcttatgttgtgtgataattatgctcgtatttttg |
200563 |
T |
|
| Q |
319 |
gttcacttatgttgnnnnnnngcttcggatttgttgttctcttatcctccataaactctatatttcagttttaactagttatatataagctatatttgca |
418 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
200562 |
gttcacttattttgtttttttgcttcggatttgttgttcacttatcctccataaactatatatttcagttttaactagttatatataagctatatttgca |
200463 |
T |
|
| Q |
419 |
atgccatgatttcttatgttttttgtgacattcaaagcatgtttcttatggttttgcggctggtttggttgcgacttcaggtgctgttcctggcctgcta |
518 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
200462 |
atgccatgatttcttatgttttttgtaacattcaaagcatgtttcttatggttttgcggctggtttggttgcagcttcaggtgctgttcctggcctgcta |
200363 |
T |
|
| Q |
519 |
acctgctacggctgggggtagttttttggccaagggcctggttggtttttgttgtctctgtaattgctttctagactttctaggcnnnnnnnnatgttaa |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
200362 |
acctgctacggctgggggtagttttttggccaagggtctggttggtttttgttgtctctgtagttgctttctagactttctaggc-tttttttatgttaa |
200264 |
T |
|
| Q |
619 |
ctggactgcctcttccttctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcagtaa |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
200263 |
ctggactgcctcttccttctggtgtttcggtttgcagacatcagttgggcaaacatgtttaaggtgcactcaagtttcaatatttcatcgtcttcaataa |
200164 |
T |
|
| Q |
719 |
tgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcat |
818 |
Q |
| |
|
||||||||| ||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
200163 |
tgaggtattcaattattatcactcaagtttaaggtgcccaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcat |
200071 |
T |
|
| Q |
819 |
gcctaaattcacaattaagacacaggttc |
847 |
Q |
| |
|
||||||||||||||||| ||||||||||| |
|
|
| T |
200070 |
gcctaaattcacaattatgacacaggttc |
200042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 200916 - 200842
Alignment:
| Q |
11 |
gaacctgtgtgactaggaagtaagctaggaagtactatgaattaagaagtaatctaagctaggatgtactatgaa |
85 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
200916 |
gaacctctgtgattaggaagtaagctaggaagtactatgaattaagaagtaatctaagctaggatgtactatgaa |
200842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 240; Significance: 1e-132; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 11 - 415
Target Start/End: Original strand, 20087585 - 20087992
Alignment:
| Q |
11 |
gaacctgtgtgactaggaagtaagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaa |
108 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||| | || | ||||||||||| |||||| |||||||||||| |
|
|
| T |
20087585 |
gaacttgtgtgactaggaagtaagctaggaagtcttatgaattaagaagtaatctaggaagtactagtaactatgaagtactgttatatttagtctttaa |
20087684 |
T |
|
| Q |
109 |
tgttgtaatgttccgttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatct |
208 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20087685 |
tgttgtaatgttccgttatctttaaattaagaagtaatctagaaagtactagtaactatgaagtactgttatgttttgccttttaattaggaagtaatct |
20087784 |
T |
|
| Q |
209 |
aagaagtgctagtaactatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgct |
308 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
20087785 |
aagaagtactagtaactatgaagtactattatgaagtactagtaacttatgtaatgtttctatcccttaatgaagacttatgttgtgtgataattatgct |
20087884 |
T |
|
| Q |
309 |
cgtatttttggttcacttatgttg-nnnnnnngcttcggatttgttgttctcttatcctccataaactctatatttcagttttaactagttatatataag |
407 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||| | | |||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
20087885 |
tgtatttttggttcacttatgttgttttttttccttcagatttgttgttcacctgtcctccataagctctatatttcagttttaactggttatatataag |
20087984 |
T |
|
| Q |
408 |
ctatattt |
415 |
Q |
| |
|
|| ||||| |
|
|
| T |
20087985 |
ctctattt |
20087992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 716 - 801
Target Start/End: Original strand, 37638703 - 37638788
Alignment:
| Q |
716 |
taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattt |
801 |
Q |
| |
|
|||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37638703 |
taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggtgtatggaagaatagatttgcaattt |
37638788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 716 - 801
Target Start/End: Complemental strand, 10372799 - 10372714
Alignment:
| Q |
716 |
taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattt |
801 |
Q |
| |
|
|||||| ||||| |||| || |||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10372799 |
taatgaagtattcgattactaccactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaattt |
10372714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 755 - 800
Target Start/End: Original strand, 12963342 - 12963387
Alignment:
| Q |
755 |
cacaatagaaagaacttttggtgtatggaagaatagatttgcaatt |
800 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12963342 |
cacaattgaaagaacttttggggtatggaagaatagatttgcaatt |
12963387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 210; Significance: 1e-114; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 26 - 332
Target Start/End: Original strand, 19646298 - 19646606
Alignment:
| Q |
26 |
ggaagtaagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccg |
123 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| | || | ||||||||||| | ||||||||| |||||||||||||||||||| | |
|
|
| T |
19646298 |
ggaattaagctaggaagtactatgaattaagaagtaatctacgaagtactagtaactatgaagtactcttatgtttaatctttaatgttgtaatgttctg |
19646397 |
T |
|
| Q |
124 |
ttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaa |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19646398 |
ttgtctttaaattaagaagtaatctaggaagtaccggtaactttgaagtattgttatgtttttcctttcaattaggaagtaatctaagaagtggtagtaa |
19646497 |
T |
|
| Q |
224 |
ctatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttggttca |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19646498 |
ctatgaagtactcttatgaagtaccagtaacttatgtaatatttctatcccttaatgaagacttatgttgtgtgataattatgcttgtatttttggttca |
19646597 |
T |
|
| Q |
324 |
cttatgttg |
332 |
Q |
| |
|
||||||||| |
|
|
| T |
19646598 |
cttatgttg |
19646606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 720 - 842
Target Start/End: Original strand, 19648194 - 19648309
Alignment:
| Q |
720 |
gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg |
819 |
Q |
| |
|
|||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
19648194 |
gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg |
19648286 |
T |
|
| Q |
820 |
cctaaattcacaattaagacaca |
842 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
19648287 |
cctaaattcacaattaagacaca |
19648309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 716 - 799
Target Start/End: Original strand, 193387 - 193470
Alignment:
| Q |
716 |
taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat |
799 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
193387 |
taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat |
193470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 716 - 799
Target Start/End: Original strand, 720991 - 721074
Alignment:
| Q |
716 |
taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat |
799 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
720991 |
taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat |
721074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 716 - 799
Target Start/End: Original strand, 882098 - 882181
Alignment:
| Q |
716 |
taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat |
799 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
882098 |
taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat |
882181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 716 - 799
Target Start/End: Complemental strand, 30983306 - 30983223
Alignment:
| Q |
716 |
taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat |
799 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
30983306 |
taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat |
30983223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 716 - 799
Target Start/End: Original strand, 44240122 - 44240205
Alignment:
| Q |
716 |
taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat |
799 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| |||| | ||||||||||||||||||||| ||||||||||| | ||||||||| |
|
|
| T |
44240122 |
taatgaagtatttaattattatcactcaagtttaagatacacaatagaaagaacttttggggtatggaagaacatatttgcaat |
44240205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 26 - 332
Target Start/End: Original strand, 4344211 - 4344518
Alignment:
| Q |
26 |
ggaagtaagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccg |
123 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| | || | ||||||||||| ||||||||||||||||||||||| ||||||| || |
|
|
| T |
4344211 |
ggaattaagctaggaagtactatgaattaagaagtaatctacgaagtactagtaactatgaagtactgttatgtttagtctttaatgtt-taatgtttcg |
4344309 |
T |
|
| Q |
124 |
ttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaa |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4344310 |
ttgtctttaaattaagaagtaatctaggaagtaccagtaactttgaagtattgttatgtttttcctttcaattaggaagtaatctaagaagtggtagtaa |
4344409 |
T |
|
| Q |
224 |
ctatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttggttca |
323 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
4344410 |
ctatgaagtactcttatgaagtactagtaacttatgtaatgtttctatcccttaatgaagacttatgttgtgtgataattatgcttgtattttttgttca |
4344509 |
T |
|
| Q |
324 |
cttatgttg |
332 |
Q |
| |
|
||||||||| |
|
|
| T |
4344510 |
cttatgttg |
4344518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 720 - 842
Target Start/End: Original strand, 4345989 - 4346104
Alignment:
| Q |
720 |
gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg |
819 |
Q |
| |
|
|||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4345989 |
gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg |
4346081 |
T |
|
| Q |
820 |
cctaaattcacaattaagacaca |
842 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
4346082 |
cctaaattcacaattaagacaca |
4346104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 716 - 799
Target Start/End: Original strand, 46407488 - 46407571
Alignment:
| Q |
716 |
taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat |
799 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
46407488 |
taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat |
46407571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 716 - 799
Target Start/End: Complemental strand, 50979022 - 50978939
Alignment:
| Q |
716 |
taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat |
799 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
50979022 |
taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat |
50978939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 723 - 799
Target Start/End: Original strand, 35606336 - 35606412
Alignment:
| Q |
723 |
gtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat |
799 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||||| |||| ||||||||||| ||||||||||| |
|
|
| T |
35606336 |
gtatttaattattatcactcaagtttaaggtgcacaatagaaagaactgttggggtatggaagaacagatttgcaat |
35606412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 716 - 800
Target Start/End: Complemental strand, 35569990 - 35569906
Alignment:
| Q |
716 |
taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt |
800 |
Q |
| |
|
|||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
35569990 |
taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaataaatttgcaatt |
35569906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 340 - 415
Target Start/End: Original strand, 5928144 - 5928219
Alignment:
| Q |
340 |
gcttcggatttgttgttctcttatcctccataaactctatatttcagttttaactagttatatataagctatattt |
415 |
Q |
| |
|
||||| |||||||||| | ||||||||| |||||||||||||||||||||||| | ||| |||||||||| ||||| |
|
|
| T |
5928144 |
gcttcagatttgttgtgcacttatcctcaataaactctatatttcagttttaagtggttctatataagctctattt |
5928219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 758 - 798
Target Start/End: Complemental strand, 50979067 - 50979027
Alignment:
| Q |
758 |
aatagaaagaacttttggtgtatggaagaatagatttgcaa |
798 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
50979067 |
aatagaaagaacttttggggtatggaagaacagatttgcaa |
50979027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 26 - 332
Target Start/End: Original strand, 22808084 - 22808392
Alignment:
| Q |
26 |
ggaagtaagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccg |
123 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||| | || | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22808084 |
ggaattaagctaggaagtactataaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgtttagtctttaatgttgtaatgttccg |
22808183 |
T |
|
| Q |
124 |
ttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaa |
223 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||| | |||||||||||||||||||||||||||| |||||| |
|
|
| T |
22808184 |
ttatctttaaattaagaagtaatctaggaagtactagtaactatgaagtactattatatttttcttttcaattaggaagtaatctaagaagtggtagtaa |
22808283 |
T |
|
| Q |
224 |
ctatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttggttca |
323 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||||||| ||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22808284 |
ccatgaagtactcttatgaagtactagtaacttatgtaatttttttatcccttaatgaagacttatgttgtgtgataattatgctcgtatttttggttca |
22808383 |
T |
|
| Q |
324 |
cttatgttg |
332 |
Q |
| |
|
||||||||| |
|
|
| T |
22808384 |
cttatgttg |
22808392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 720 - 842
Target Start/End: Original strand, 22809984 - 22810099
Alignment:
| Q |
720 |
gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg |
819 |
Q |
| |
|
|||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22809984 |
gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg |
22810076 |
T |
|
| Q |
820 |
cctaaattcacaattaagacaca |
842 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
22810077 |
actaaattcacaattaagacaca |
22810099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 716 - 799
Target Start/End: Original strand, 33232457 - 33232540
Alignment:
| Q |
716 |
taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat |
799 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
33232457 |
taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat |
33232540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 716 - 799
Target Start/End: Complemental strand, 7072115 - 7072032
Alignment:
| Q |
716 |
taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat |
799 |
Q |
| |
|
|||||| ||||||||||||||||||| || | |||||||||||||||||||||||||||| ||||||||||| | ||||||||| |
|
|
| T |
7072115 |
taatgaagtatttaattattatcactcaaatttaaggtgcacaatagaaagaacttttggggtatggaagaacatatttgcaat |
7072032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 716 - 800
Target Start/End: Original strand, 22481515 - 22481599
Alignment:
| Q |
716 |
taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt |
800 |
Q |
| |
|
|||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22481515 |
taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt |
22481599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 613 - 659
Target Start/End: Original strand, 22808657 - 22808703
Alignment:
| Q |
613 |
tgttaactggactgcctcttccttctggtgtttcggtttgcagacat |
659 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22808657 |
tgttaattggactgcctcttccttctggtgtttcggtctgcagacat |
22808703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 3e-90; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 39 - 332
Target Start/End: Complemental strand, 23362651 - 23362369
Alignment:
| Q |
39 |
gaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgtctttaaatt |
136 |
Q |
| |
|
|||||||||||||||||||||||||||| | || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23362651 |
gaagtactatgaattaagaagtaatctacgaagtactagtaactattaagtattgttatgtttagtctttaatgttgtaatgttccgttgtctttaaatt |
23362552 |
T |
|
| Q |
137 |
aagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaactatgaagtactc |
236 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
23362551 |
aagaagtaatctaggaagtactaataactatgaagtactgttatgtttttcctttcaattaggaagtaatctaagaagtggtagtaaccatgaagtact- |
23362453 |
T |
|
| Q |
237 |
ttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttggttcacttatgttg |
332 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23362452 |
------------agtaacttatgtaatgtttttatcccttaatgaagacttatgttgtgtgataattatgctcgtatttttggttcacttatgttg |
23362369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 720 - 842
Target Start/End: Complemental strand, 23361058 - 23360942
Alignment:
| Q |
720 |
gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaac-ttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcat |
818 |
Q |
| |
|
|||||||| ||||||||||||| |||| |||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
23361058 |
gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaactttttggtgtatgaaagaatag-------atttgcaattctacgacgcat |
23360966 |
T |
|
| Q |
819 |
gcctaaattcacaattaagacaca |
842 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
23360965 |
gactaaattcacaattaagacaca |
23360942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 716 - 799
Target Start/End: Original strand, 13895999 - 13896082
Alignment:
| Q |
716 |
taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat |
799 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
13895999 |
taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat |
13896082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 716 - 799
Target Start/End: Original strand, 14036616 - 14036699
Alignment:
| Q |
716 |
taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat |
799 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
14036616 |
taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat |
14036699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 716 - 799
Target Start/End: Original strand, 14380107 - 14380190
Alignment:
| Q |
716 |
taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat |
799 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
14380107 |
taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat |
14380190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 716 - 800
Target Start/End: Complemental strand, 5917028 - 5916944
Alignment:
| Q |
716 |
taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt |
800 |
Q |
| |
|
|||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5917028 |
taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt |
5916944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 716 - 800
Target Start/End: Original strand, 36311597 - 36311681
Alignment:
| Q |
716 |
taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt |
800 |
Q |
| |
|
|||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36311597 |
taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt |
36311681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 1e-37; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 720 - 838
Target Start/End: Original strand, 7011653 - 7011764
Alignment:
| Q |
720 |
gaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatttgcaattctacgacgcatg |
819 |
Q |
| |
|
|||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7011653 |
gaggtattcaattattatcactcaagtttaaggtgcacaatagaaagaacttttggtgtatggaagaatag-------atttgcaattctacgacgcatg |
7011745 |
T |
|
| Q |
820 |
cctaaattcacaattaaga |
838 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
7011746 |
cctaaattcacaattaaga |
7011764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 716 - 799
Target Start/End: Complemental strand, 51125466 - 51125383
Alignment:
| Q |
716 |
taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat |
799 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
51125466 |
taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat |
51125383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 716 - 799
Target Start/End: Original strand, 52692542 - 52692625
Alignment:
| Q |
716 |
taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat |
799 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
52692542 |
taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacagatttgcaat |
52692625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 743 - 800
Target Start/End: Complemental strand, 16246876 - 16246819
Alignment:
| Q |
743 |
aagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt |
800 |
Q |
| |
|
|||| |||| |||||||| |||||||||||| | |||||||||||||||||||||| |
|
|
| T |
16246876 |
aagtttaagatgcacaattgaaagaacttttaaggcatggaagaatagatttgcaatt |
16246819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 4e-25; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 716 - 799
Target Start/End: Complemental strand, 21515786 - 21515703
Alignment:
| Q |
716 |
taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat |
799 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| | ||||||||| |
|
|
| T |
21515786 |
taatgaagtatttaattattatcactcaagtttaaggtgcacaatagaaagaacttttggggtatggaagaacatatttgcaat |
21515703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 716 - 799
Target Start/End: Original strand, 30019220 - 30019303
Alignment:
| Q |
716 |
taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaat |
799 |
Q |
| |
|
|||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| | ||||||||| |
|
|
| T |
30019220 |
taatgaagtatttaattattatcactctagtttaaggtgcacaatagaaagaacttttggggtatggaagaacatatttgcaat |
30019303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 716 - 800
Target Start/End: Original strand, 16547456 - 16547540
Alignment:
| Q |
716 |
taatgaggtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaatt |
800 |
Q |
| |
|
|||||| ||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16547456 |
taatgaagtattcaattactatcactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaatt |
16547540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 723 - 801
Target Start/End: Complemental strand, 17830845 - 17830767
Alignment:
| Q |
723 |
gtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagatttgcaattt |
801 |
Q |
| |
|
||||| ||||| || |||| |||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17830845 |
gtattcaattactaccactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagatttgcaattt |
17830767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0394 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0394
Description:
Target: scaffold0394; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 723 - 794
Target Start/End: Complemental strand, 6678 - 6607
Alignment:
| Q |
723 |
gtatttaattattatcacttaagtgtaaggtgcacaatagaaagaacttttggtgtatggaagaatagattt |
794 |
Q |
| |
|
||||| ||||| || |||| |||| |||| |||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
6678 |
gtattcaattactaccactcaagtttaagatgcacaattgaaagaacttttggggtatggaagaatagattt |
6607 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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