View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12953_high_20 (Length: 262)

Name: NF12953_high_20
Description: NF12953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12953_high_20
NF12953_high_20
[»] chr7 (4 HSPs)
chr7 (88-258)||(48364287-48364457)
chr7 (54-133)||(35096163-35096241)
chr7 (56-133)||(35070117-35070193)
chr7 (201-251)||(45684179-45684229)
[»] scaffold0187 (2 HSPs)
scaffold0187 (54-131)||(30520-30597)
scaffold0187 (136-197)||(30624-30686)
[»] chr3 (8 HSPs)
chr3 (54-135)||(13220098-13220179)
chr3 (79-135)||(21660021-21660077)
chr3 (198-250)||(16773893-16773945)
chr3 (198-250)||(15987992-15988044)
chr3 (198-250)||(28372797-28372849)
chr3 (198-250)||(28380619-28380671)
chr3 (136-197)||(13220202-13220264)
chr3 (21-57)||(13220032-13220068)
[»] chr1 (2 HSPs)
chr1 (54-131)||(37908480-37908557)
chr1 (136-197)||(37908391-37908453)
[»] chr8 (2 HSPs)
chr8 (56-135)||(7243568-7243647)
chr8 (198-252)||(13978372-13978426)
[»] chr4 (1 HSPs)
chr4 (198-250)||(18151541-18151593)
[»] scaffold0002 (1 HSPs)
scaffold0002 (90-135)||(237530-237575)
[»] chr2 (1 HSPs)
chr2 (140-197)||(43025871-43025929)


Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 88 - 258
Target Start/End: Original strand, 48364287 - 48364457
Alignment:
Q  88 atggtacttgtgatatttcggcttgggatgcattttatttggcagtttatgggttattttttattggcattggaagcatattacattacggcaaataatg 187  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||| |||||    
T  48364287 atggtacttatgatatttcggtttgggatgcattttatttggcagtttatgggttattttttattggcatcgaaaacatattacattacggcaagtaatg 48364386  T
Q  188 tttcacaattacaataaagataaagaaaggagtttcagttttcaaatttttgaaaacctctaatctaacat 258  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  48364387 tttcacaattacaataaagataaagaaaggagttttagttttcaaatttttgaaaacctctaatctaacat 48364457  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 35096241 - 35096163
Alignment:
Q  54 ggttatagttttccttgtgatggtctgagacgagatggtacttgtgatatttcggcttgggatgcattttatttggcagt 133  Q
    ||||||||||||| ||| ||| || || || ||| |||||||||||||||||||||||||||  || |||||||||||||    
T  35096241 ggttatagttttctttgagatagtttg-gatgaggtggtacttgtgatatttcggcttgggacacaatttatttggcagt 35096163  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 133
Target Start/End: Complemental strand, 35070193 - 35070117
Alignment:
Q  56 ttatagttttccttgtgatggtctgagacgagatggtacttgtgatatttcggcttgggatgcattttatttggcagt 133  Q
    ||||||||||| ||| ||| || || || ||| |||||||||||||||||||||||||||  || |||||||||||||    
T  35070193 ttatagttttctttgcgatagtttg-gatgaggtggtacttgtgatatttcggcttgggacacaatttatttggcagt 35070117  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 45684179 - 45684229
Alignment:
Q  201 ataaagataaagaaaggagtttcagttttcaaatttttgaaaacctctaat 251  Q
    |||||||||||||||||  |||| ||||||||| ||||| |||||||||||    
T  45684179 ataaagataaagaaagggatttccgttttcaaaattttggaaacctctaat 45684229  T

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Target: scaffold0187 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 30520 - 30597
Alignment:
Q  54 ggttatagttttccttgtgatggtctgagacgagatggtacttgtgatatttcggcttgggatgcattttatttggca 131  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  30520 ggttatagttttccttgcgatggtccgagacgaggtggtacttgtgatatttcggcttgggacgcattttatttggca 30597  T

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Target: scaffold0187; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 30624 - 30686
Alignment:
Q  136 atgggttattttttattggcattggaagcatattacattacggca-aataatgtttcacaatt 197  Q
    |||||||| ||||||||||||||||||||| ||||||||| ||||   |||||||||||||||    
T  30624 atgggttactttttattggcattggaagcacattacattatggcagggtaatgtttcacaatt 30686  T

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Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 13220098 - 13220179
Alignment:
Q  54 ggttatagttttccttgtgatggtctgagacgagatggtacttgtgatatttcggcttgggatgcattttatttggcagttt 135  Q
    ||||||||||||||||| ||||||| | |||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  13220098 ggttatagttttccttgcgatggtccgggacgaggtggtacttgtgatatttcggcttgggacgcattttatttggcagttt 13220179  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 21660077 - 21660021
Alignment:
Q  79 tgagacgagatggtacttgtgatatttcggcttgggatgcattttatttggcagttt 135  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  21660077 tgagacgaggtggtacttgtgatatttcggcttgggacgcattttatttggcagttt 21660021  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 16773945 - 16773893
Alignment:
Q  198 acaataaagataaagaaaggagtttcagttttcaaatttttgaaaacctctaa 250  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  16773945 acaataaagataaagaaaggggtttccgttttcaaatttttgaaaacctctaa 16773893  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 15988044 - 15987992
Alignment:
Q  198 acaataaagataaagaaaggagtttcagttttcaaatttttgaaaacctctaa 250  Q
    |||||||||||||||||||| ||||  ||||||||||||||||||||||||||    
T  15988044 acaataaagataaagaaaggggttttcgttttcaaatttttgaaaacctctaa 15987992  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 28372849 - 28372797
Alignment:
Q  198 acaataaagataaagaaaggagtttcagttttcaaatttttgaaaacctctaa 250  Q
    |||||||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  28372849 acaataaagataaagaaagtggtttccgttttcaaatttttgaaaacctctaa 28372797  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 28380671 - 28380619
Alignment:
Q  198 acaataaagataaagaaaggagtttcagttttcaaatttttgaaaacctctaa 250  Q
    |||||||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  28380671 acaataaagataaagaaagtggtttccgttttcaaatttttgaaaacctctaa 28380619  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 13220202 - 13220264
Alignment:
Q  136 atgggttattttttattggcattggaagcatattacattacggca-aataatgtttcacaatt 197  Q
    |||||||| ||||||||||||||||||||| ||||||||| ||||   |||||||||||||||    
T  13220202 atgggttactttttattggcattggaagcacattacattatggcagggtaatgtttcacaatt 13220264  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 13220032 - 13220068
Alignment:
Q  21 ttgatcttagtaaaagaagctttggatgcacgcggtt 57  Q
    ||||||||||||||||  |||||||||||||||||||    
T  13220032 ttgatcttagtaaaaggtgctttggatgcacgcggtt 13220068  T

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Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 37908557 - 37908480
Alignment:
Q  54 ggttatagttttccttgtgatggtctgagacgagatggtacttgtgatatttcggcttgggatgcattttatttggca 131  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  37908557 ggttatagttttccttgcgatggtccgagacgaggtggtacttgtgatatttcggcttgggacgcattttatttggca 37908480  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 37908453 - 37908391
Alignment:
Q  136 atgggttattttttattggcattggaagcatattacattacggca-aataatgtttcacaatt 197  Q
    |||||||| ||||||||||||||||||||| ||||||||| ||||   |||||||||||||||    
T  37908453 atgggttactttttattggcattggaagcacattacattatggcagggtaatgtttcacaatt 37908391  T

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Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 7243568 - 7243647
Alignment:
Q  56 ttatagttttccttgtgatggtctgagacgagatggtacttgtgatatttcggcttgggatgcattttatttggcagttt 135  Q
    ||||| |||| |||| ||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||    
T  7243568 ttataatttttcttgcgatggtccgagacaaggtggtacttgtgatatttcggcttgggatgcattttatttggtagttt 7243647  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 13978372 - 13978426
Alignment:
Q  198 acaataaagataaagaaaggagtttcagttttcaaatttttgaaaacctctaatc 252  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  13978372 acaataaagataaagaaaggggtttcggttttcaaatttttgaaaacctctaatc 13978426  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 18151541 - 18151593
Alignment:
Q  198 acaataaagataaagaaaggagtttcagttttcaaatttttgaaaacctctaa 250  Q
    |||||||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  18151541 acaataaagataaagaaagtggtttccgttttcaaatttttgaaaacctctaa 18151593  T

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Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 237575 - 237530
Alignment:
Q  90 ggtacttgtgatatttcggcttgggatgcattttatttggcagttt 135  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||    
T  237575 ggtacttgtgatatttctgcttgggacgcattttatttggcagttt 237530  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 43025929 - 43025871
Alignment:
Q  140 gttattttttattggcattggaagcatattacattacggca-aataatgtttcacaatt 197  Q
    |||| ||||||||||||||||||||| ||||||||| ||||   |||||||||||||||    
T  43025929 gttactttttattggcattggaagcacattacattatggcagggtaatgtttcacaatt 43025871  T

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