View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12953_high_21 (Length: 261)
Name: NF12953_high_21
Description: NF12953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12953_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 32200720 - 32200938
Alignment:
| Q |
13 |
tatataccatagtcactgagtgttgtgacatttcaacaaataccttgtttgcaaaattcaagcttatacaaagagagtaactga--atacccaacaaaac |
110 |
Q |
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| T |
32200720 |
tatataccatagtcactgagtgttgtgacatttcaacaaataccttgtttgcaaaattcaagcttatacaaagagagtaactgaatatacccaacaaaac |
32200819 |
T |
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| Q |
111 |
caaatgatacaatgtcaagaaaaacaatcagttgcacatnnnnnnngtattgaccaagcaaaaccttaaatttaaatttaaccaattcaacatgaactta |
210 |
Q |
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| T |
32200820 |
caaatgatacaatgtcaagaaaaacaatcggttgcacataaaaaaagtattgaccaagcaaaaccttaaatttaaatttaaccaattcaaaatgaactta |
32200919 |
T |
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| Q |
211 |
ctgttcctcgagggagaat |
229 |
Q |
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| T |
32200920 |
ctgttcctcgagggagaat |
32200938 |
T |
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Back To:
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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 5528620 - 5528561
Alignment:
| Q |
35 |
ttgtgacatttcaacaaataccttgtttgcaaaattcaagcttatacaaagagagtaact |
94 |
Q |
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| T |
5528620 |
ttgtgacatttcaacaaacaccttgtctgcaaaattcaaacctatactcaaagagtaact |
5528561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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