View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12953_high_23 (Length: 236)
Name: NF12953_high_23
Description: NF12953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12953_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 55174264 - 55174470
Alignment:
| Q |
15 |
aaaaacttcattaatctcatggttgtaataaaatttcatacacatgaaaatgcaacctcttgaaaatttcacttatctaaattctcaagttaatggaaaa |
114 |
Q |
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| T |
55174264 |
aaaaacttcattaatctcatggttgtaataaaatttcatacacatgaaaatgcaacctcttgaaaatttcacttatctaaattctcaagttaatggaaaa |
55174363 |
T |
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| Q |
115 |
agtatatggcccggaatacaatgaatatgagagagaagcgcacgtgcatatgttaatgcatgttttctttctatttttcatttacaaaaactgaaacaat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
55174364 |
agtatatggcccggaatacaatgaatatgagagagaagcgcacgtgcatatgttaatgcatgttttctttctatttttcattcacaaaaactgaaacaat |
55174463 |
T |
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| Q |
215 |
gatatta |
221 |
Q |
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||||||| |
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| T |
55174464 |
gatatta |
55174470 |
T |
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