View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12953_high_4 (Length: 777)
Name: NF12953_high_4
Description: NF12953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12953_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 532; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 13 - 655
Target Start/End: Original strand, 35000776 - 35001434
Alignment:
| Q |
13 |
atacttagttgattaatcaaaaggtttttatatatgacctataattt-acagtaacaatctacagtttatctttcttttcatataaaatttaaaatctcc |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35000776 |
atacttagttgattaatcaaaaggtttttatatatgacctataattttacagtaacaatctacaatttatctttcttttcatataaaatttaaaatctcc |
35000875 |
T |
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| Q |
112 |
tgtttatttggagtaatgttttttggaatcataggaaagtaagcataagtataaagcggtccaaacccttattttgaatctaaaacaaaatacatttttt |
211 |
Q |
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| T |
35000876 |
tgtttatttggagtaatgttttttggaatcataggaaagtaagcataagtataaaccgatccaaacccttactttgaatctaaaacaaaacacatttttt |
35000975 |
T |
|
| Q |
212 |
aaggcctataagttataatccttcaaagaaaatatgttttactattattaaatattaagttgaaattattcattacggcaacatgtaaattcaactgatt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
35000976 |
aaggcctataagttataatccttcaaagaaaatatgttttactattattaaatattaagttgaaattattcattacggcaacacgtaaattcaatcgatt |
35001075 |
T |
|
| Q |
312 |
aaacgtcaagttcatcttcacagagttgtattatcaattatttcatgtgatatcggatattgttttttctccttatttagaagacctcgttttaatattc |
411 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35001076 |
aagcgtcaagttcatcttcacagagttgtattatcaattatttgatgtgacatcggatattgttttttctccttacttagaagacctcgttttaatattc |
35001175 |
T |
|
| Q |
412 |
gctttaagtcttaaaataatatcgaaagtggggtgattttggcc--------tacctttacacttatattatcctcaattcatagtactattattaacta |
503 |
Q |
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| T |
35001176 |
gctttaagtcttaaaataatgtcgaaagtggggtgattttggcctaaatatgtacctttgcacttatattatcctcaattcatagtattattattaacta |
35001275 |
T |
|
| Q |
504 |
atatggagattgatcacttcacacttgaatttccaactacacatgtatcaacaccggtatcctaggtaacatttagcatggagacagatagaacaagtca |
603 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35001276 |
atatggagcttgatcacttcacacttgaatttccaactacacatgtatcaacaccggtatcctaggtaacatttagcatggagacagatagaacaagtca |
35001375 |
T |
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| Q |
604 |
atttgttttgttttatactttttaattctact-------atggaatcaaaatatttaac |
655 |
Q |
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| T |
35001376 |
atttgttttgttttatactttttaattctactctttgaaatggaatcaaaatatttaac |
35001434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 691 - 762
Target Start/End: Original strand, 35001470 - 35001541
Alignment:
| Q |
691 |
aatctagactaaaactcactatcctaatctaacatacctatgaaatggtaccataggttgcactgcatagtg |
762 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35001470 |
aatctagactaaaactcactatcctaatctaacatacctatgaaatggtaccataggttgcactgcatagtg |
35001541 |
T |
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