View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12953_low_10 (Length: 455)
Name: NF12953_low_10
Description: NF12953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12953_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 2822868 - 2823076
Alignment:
| Q |
14 |
catttccggcgtctgataccggcggatgtagactgtagttacattcaatagcctttgttttatcaaattattaccggatgtgtcaatgtctgactaatgt |
113 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2822868 |
catttccggcgtctgatactggcggatgtagactgtagttacattcaatagcctttgttttatcaaattattaccggatgtgtcaatgtctgactaatgt |
2822967 |
T |
|
| Q |
114 |
ctagtgtttgcgtcggtgcttcatagaggattaacacatcaaaattggattttatcatttgatgtttcccaacaaattctacacaactgatacaaaaaca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2822968 |
ctagtgtttgcgtcggtgcttcatagaggattaacacatcaaaattggattttatcatttgatgtttcccaacagattctacacaactgatacaaaaaca |
2823067 |
T |
|
| Q |
214 |
aggattatg |
222 |
Q |
| |
|
||||||||| |
|
|
| T |
2823068 |
aggattatg |
2823076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 300 - 362
Target Start/End: Original strand, 2823124 - 2823186
Alignment:
| Q |
300 |
tcatggtgtattctttcaagtatttcatggtgcattctttcaagtattttttcttctgatgaa |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2823124 |
tcatggtgtattctttcaagtatttcatggtgcattctttcaagtattttttcttctgatgaa |
2823186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 2823091 - 2823120
Alignment:
| Q |
238 |
gaaggattatgttatatgcaacaatagagt |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
2823091 |
gaaggattatgttatatgcaacaatagagt |
2823120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 55456355 - 55456431
Alignment:
| Q |
145 |
taacacatcaaaattggattttatcatttgatgtttcccaacaaattctacacaactgatacaaaaacaaggattatg |
222 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| |
|
|
| T |
55456355 |
taacacatccaaattggatcttatcatttgatgtttcccaacagattctacacaactgata-aaaaacaaagattatg |
55456431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 334 - 431
Target Start/End: Original strand, 55456492 - 55456588
Alignment:
| Q |
334 |
ttctttcaagtattttttcttctgatgaagtcttgtctgataataattttcccaagtgtttttcacaataaaaagaatcgatgaaatcaatgtctttt |
431 |
Q |
| |
|
||||||||||||||||||||||| || |||| || ||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| |||| |
|
|
| T |
55456492 |
ttctttcaagtattttttcttctaatcaagtaccgtgtgataataattttcc-aagtgtttttcgcaataaaaagaatcaatgaaatcaatgtttttt |
55456588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 261 - 324
Target Start/End: Original strand, 55456444 - 55456506
Alignment:
| Q |
261 |
atagagtctactgctaattctataactctgttgtagctctcatggtgtattctttcaagtattt |
324 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| |
|
|
| T |
55456444 |
atagagtctactgctaattctataactct-cagtagctctcatgatgtgttctttcaagtattt |
55456506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 55456313 - 55456351
Alignment:
| Q |
66 |
ctttgttttatcaaattattaccggatgtgtcaatgtct |
104 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
55456313 |
ctttgttttatcaaattattagcggatatgtcaatgtct |
55456351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University