View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12953_low_14 (Length: 429)
Name: NF12953_low_14
Description: NF12953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12953_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 37202660 - 37202419
Alignment:
| Q |
11 |
atactgcaactcaattgtataggaaagtagaatcgggcttatttctcccgtctccggtcgcgaaacggagacaatactggctttgggcaattcctcgaaa |
110 |
Q |
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| T |
37202660 |
atactgcaactcaattgtataggaaagtagaatcgggcttatttctcccgtctccggtcgcgaaacggagacaatactggctttgggcaattcctcgaaa |
37202561 |
T |
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| Q |
111 |
atcctcaccggttctccgcattgccgggatgctgatactgaatcagacgattgaatcaacggctccgacgacatcggtcggaatcaacgatcaatttcag |
210 |
Q |
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| T |
37202560 |
atcctcaccggttctccgcattgccgggatgctgatactgaatcagacgattgaatcaacggctccgacgacataggtcggaatcaacgatcaatttcag |
37202461 |
T |
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| Q |
211 |
ataattctctacttgaacgcaaagtacacaacacgttactgt |
252 |
Q |
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| T |
37202460 |
ataattctctacttgaacgcaaagtacacaacacgttactgt |
37202419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 281 - 411
Target Start/End: Complemental strand, 37202390 - 37202260
Alignment:
| Q |
281 |
attgacatgaaaggagtgtgttggtttttatagtttttagagtttcttacatcataacatttgttacaaagtaataaatatattaaatggtatgattggt |
380 |
Q |
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| T |
37202390 |
attgacatgaaaggagtgtgttggtttttatagtttttagagtttcttacatcataacatttgttacaaagtaataaatatattaaatgttatgattggt |
37202291 |
T |
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| Q |
381 |
tggaatataagaatcttttaggtacaattgg |
411 |
Q |
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| T |
37202290 |
tggaatataagaatcttttaggtacaattgg |
37202260 |
T |
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