View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12953_low_18 (Length: 363)
Name: NF12953_low_18
Description: NF12953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12953_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 15 - 345
Target Start/End: Complemental strand, 1674574 - 1674244
Alignment:
| Q |
15 |
aatactacaagcttcctctaaagaagaaaccctaaacaaaccatttttcatatcaatctcctccaaacaaacaccagcacaacacaaagccaacttctcc |
114 |
Q |
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| T |
1674574 |
aatactacaagcttcctctaaagaagaaaccctaaacaaaccatttttcatatcaatctcctccaaacaaacaccagcacaacacaaagccaacttctcc |
1674475 |
T |
|
| Q |
115 |
accacctcaggaaactgagcagccaaactataccctacaaaccctccatagcttataccaaccaagctcaatctattcacaccatgagcctccatgagct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1674474 |
accacctcaggaaactgagcagccaaactataccctacaaaccctccatagcttataccaaccaagctcaatctattcacaccatgagcctccatgagct |
1674375 |
T |
|
| Q |
215 |
tcttcaaacacaaagcttgaaaagactctgtcctctctggccttgaagtgaatgatccaccaaagaagagaagatcaggcacatataaattgaactgtct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1674374 |
tcttcaaacacaaagcttgaaaagactctgtcctctctggccttgaagtgaatgatccaccaaagaagagaagatcaggcacatataaattgaactgtct |
1674275 |
T |
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| Q |
315 |
gatgaaatgatgaagatgttcaccatattgc |
345 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
1674274 |
gatgaaatgatgaagatgttcaccatattgc |
1674244 |
T |
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