View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12953_low_19 (Length: 360)
Name: NF12953_low_19
Description: NF12953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12953_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 5 - 333
Target Start/End: Complemental strand, 47420400 - 47420072
Alignment:
| Q |
5 |
cagaatgcacactatttcaccnnnnnnnngggaggataaggagaagtcagaataaggaggttgaaatgtaggggaattaaatgagagtttcaaggattta |
104 |
Q |
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| T |
47420400 |
cagaatgcacactatttcaccaaaaaaaagggaggataaggagaagtcagaataaggaggttgaaatgtaggggaattaaatgagagtttcaaggattta |
47420301 |
T |
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| Q |
105 |
atggaggaattggaaaagaatgagcctttgatgggagttttggaattgtaggagttatgaattatattatacaatgtgcaaaaggtcactgactgttgtt |
204 |
Q |
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| T |
47420300 |
atggaggaattggaaaagaacgagcctttgatgggagttttggaattgtaggagttatgaattatattatacaatgtgcaaaagttcactgactgttgtt |
47420201 |
T |
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| Q |
205 |
gttcagctaacagtagaaaatgtaatcaacttggaaaatttgcaggcacaattgaaagtatatggtaaatagaaagctgaggtgtcatcaacaagatttg |
304 |
Q |
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| T |
47420200 |
gttcagctaacagtagaaaatgtaatcaacttggaaaatttgcaggcacaattgaaagtatatggtaaatagaaagctgaggtgtcatcaacaagatttg |
47420101 |
T |
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| Q |
305 |
gagtcagctttaatagattattattatta |
333 |
Q |
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| T |
47420100 |
gagtcagctttaatagattattattatta |
47420072 |
T |
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