View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12953_low_20 (Length: 328)
Name: NF12953_low_20
Description: NF12953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12953_low_20 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 105 - 328
Target Start/End: Original strand, 6729294 - 6729517
Alignment:
| Q |
105 |
atagatcgatgtgttaacaatcggctgagtgaaatagccataggtttgggtttgcgaaagaggtacggtaaggggggtagtgtgatgaagtgataacagt |
204 |
Q |
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| T |
6729294 |
atagatcgatgtgttaacaatcggctgagtgaaatagccataggtttgggtttgtgaaagaggtacggtaaggggggtagtgtgatgaagtgataacggt |
6729393 |
T |
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| Q |
205 |
gtagagaaaggaataaaatttgttgaggtagagaatggggttgttgcagatccagtgaaaggtgatgagtttgtgtgggttagaggtagtgtggtgtcgg |
304 |
Q |
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| T |
6729394 |
gtagagaaaagaataaaatttgttgaggtagagaatggggttgttgcagatctagtgaagggtgatgagtttgtgtgggttagaggtagtgtggtgttgg |
6729493 |
T |
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| Q |
305 |
atataggagtaaggactggttcaa |
328 |
Q |
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| T |
6729494 |
atataggagtaaggattggttcaa |
6729517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 6729208 - 6729282
Alignment:
| Q |
1 |
gtttggtacttgggatagggtggtgtggagtaggaaaaattgtagtgtggaggagttgaaacggcgagactgaaa |
75 |
Q |
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| T |
6729208 |
gtttggtacgtgggatagggtggtgtggagtaggaaaaattgtagtgtggaggagttgaaatggcgaaactgaaa |
6729282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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