View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12953_low_3 (Length: 831)
Name: NF12953_low_3
Description: NF12953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12953_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 749; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 749; E-Value: 0
Query Start/End: Original strand, 15 - 816
Target Start/End: Original strand, 55174264 - 55175065
Alignment:
| Q |
15 |
aaaaacttcattaatctcatggttgtaataaaatttcatacacatgaaaatgcaacctcttgaaaatttcacttatctaaattctcaagttaatggaaaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55174264 |
aaaaacttcattaatctcatggttgtaataaaatttcatacacatgaaaatgcaacctcttgaaaatttcacttatctaaattctcaagttaatggaaaa |
55174363 |
T |
|
| Q |
115 |
agtatatggcccggaatacaatgaatatgagagagaagcgcacgtgcatatgttaatgcatgttttctttctatttttcatttacaaaaactgaaacaat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
55174364 |
agtatatggcccggaatacaatgaatatgagagagaagcgcacgtgcatatgttaatgcatgttttctttctatttttcattcacaaaaactgaaacaat |
55174463 |
T |
|
| Q |
215 |
gatattaatcaaaatccaaaaccaagacttttctttgcctttcattgagatcactctcatttgcctctctgcattaagatttttctttactcaagccnnn |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55174464 |
gatattaatcaaaatccaaaaccaagacttttctttgcctttcattgagatcactctcatttgcctctctgcattaagatttttctttactcaagccaaa |
55174563 |
T |
|
| Q |
315 |
nnnntgaacagttaagagttaggaatatataaatgctttggtaaaataccttaaccatattcttttgctaccattatattagttcttaagcaatttaagt |
414 |
Q |
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| T |
55174564 |
aaaatgaacagttaagtgttaggaatatataaatgttttggtaaaataccttaaccttattcttttgctaccattatattagttcttaagcaatttaagt |
55174663 |
T |
|
| Q |
415 |
agttgaagttgttaacattgtgtaaagttaaagggtatcttccatttgacttaatttccagtccaaaaccagagattttcagataaaattaattgcttag |
514 |
Q |
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| T |
55174664 |
atttgaagttgttaacattgtgtagagttaaagggtatcttccatttgacttaatttccagtccaaaaccagagattttcagataaaattaattgcttag |
55174763 |
T |
|
| Q |
515 |
tcctcaatggtagaacatcaatcctgtgctaccttggtcaatgcctctacattttgtgatatagaacaagaagtgaatggagataatgtcaacaatgttg |
614 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
55174764 |
tcctcaatggtagaacatcaatcctgtgctaccttggtcaatgcctctacattttgtgatatagaacaagaagtgaatggagataatgtcaacgatgttt |
55174863 |
T |
|
| Q |
615 |
ctcagatttcagccgagttggaaagggaaaggaagaagaatgcggagctcatggaaaaaatatctatgctcgaagctcaggtaagggaaagaaacaccga |
714 |
Q |
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| T |
55174864 |
ctcagatttcagccgagttggaaagggaaaggaagaagaatgcggagctcatggaaaaaatatctatgctcgaagctcaggtaagggaaagaaacaccga |
55174963 |
T |
|
| Q |
715 |
aactcaagtaacattatcttttttatttgtactttgcttaaataagtgttgacttgtttatattcaataaaagctgacatctagagtgaaagaatgacac |
814 |
Q |
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| T |
55174964 |
aactcaagtaacattatcttttttatttgtactttgcttaaataagtgttgacttgtttatattcaataaaagctgacatctagagtgaaagaatgacac |
55175063 |
T |
|
| Q |
815 |
ag |
816 |
Q |
| |
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|| |
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| T |
55175064 |
ag |
55175065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 610 - 737
Target Start/End: Original strand, 55178544 - 55178669
Alignment:
| Q |
610 |
tgttgctcagatttcagccgagttggaaagggaaaggaagaagaatgcggagctcatggaaaaaatatctatgctcgaagctcaggtaagggaaagaaac |
709 |
Q |
| |
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||||||| |||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| |||| |||||||||| |||||||||||||| |
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| T |
55178544 |
tgttgctgagatttcattggagttggaaagggaaaggctgaaaaatgcggagctcatggaaaaaatatcaatgcacgaagctcagataagggaaagaaac |
55178643 |
T |
|
| Q |
710 |
accgaaactcaagtaacattatcttttt |
737 |
Q |
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|||||||||| |||||||||||||||| |
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| T |
55178644 |
accgaaactc--gtaacattatcttttt |
55178669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 566 - 688
Target Start/End: Original strand, 50906734 - 50906856
Alignment:
| Q |
566 |
ttttgtgatatagaacaagaagtgaatggagataat-gtcaacaatgttgctcagatttcagccgagttggaaagggaaaggaagaagaatgcggagctc |
664 |
Q |
| |
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|||||||| |||||| |||||| ||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||| ||||||||| |||| || |
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| T |
50906734 |
ttttgtgacatagaataagaagcgaatggagataattgtcaacgttgttgctcgtatttcagccgagttggaaagggaaaggcagaagaatgtggagatc |
50906833 |
T |
|
| Q |
665 |
atggaaaaaatatctatgctcgaa |
688 |
Q |
| |
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|||| ||||||||| ||||||||| |
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| T |
50906834 |
atgg-aaaaatatcgatgctcgaa |
50906856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 727 - 813
Target Start/End: Original strand, 50906872 - 50906959
Alignment:
| Q |
727 |
attatcttttttatttgtactttgcttaaataagtgttgacttgttt-atattcaataaaagctgacatctagagtgaaagaatgaca |
813 |
Q |
| |
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||||||||| ||||| ||||||| |||||||||||||||||| ||| ||| |||| ||||||| ||||||||||||||||||||||| |
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| T |
50906872 |
attatctttcttattcgtactttacttaaataagtgttgactcattttataatcaacaaaagctaacatctagagtgaaagaatgaca |
50906959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 511 - 567
Target Start/End: Original strand, 50952792 - 50952849
Alignment:
| Q |
511 |
ttagtcctcaatggtagaacatcaatcctgtgctacc-ttggtcaatgcctctacatt |
567 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||| |
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| T |
50952792 |
ttagtcctcaatggtagaacatcaatcatgtgctacctttggtcaatgcctctgcatt |
50952849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 357 - 408
Target Start/End: Original strand, 55178367 - 55178418
Alignment:
| Q |
357 |
aaaataccttaaccatattcttttgctaccattatattagttcttaagcaat |
408 |
Q |
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|||||||||||||| ||||||||||||||| |||||||||| ||||||||| |
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| T |
55178367 |
aaaataccttaaccttattcttttgctaccgatatattagtttttaagcaat |
55178418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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