View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12953_low_30 (Length: 233)
Name: NF12953_low_30
Description: NF12953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12953_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 37835163 - 37834957
Alignment:
| Q |
20 |
tgttcctcctattttatctagttcattcaattttcatcttgtttgtataactttgtgatattgtttttacagtttttaattgacatatcatgttaaagtt |
119 |
Q |
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| T |
37835163 |
tgttcctcctattttatctagttcattcaattttcatcttgtttgtataactttgtgatattgtttttacagtttttaattgacatatcatgttaaagtt |
37835064 |
T |
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| Q |
120 |
gttcattgaatagaaaatctttgtcatacgtgctatatcatgtagtctggtggaggatgttattcgttgtacttttctctttaagcgtagggccctttgc |
219 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37835063 |
gttcattgaataaaaaatctttgtcatacgtgctatatcatgtagtctggtggaggatgttattcgttgtacttttctctttaagcgtagggccctgtgt |
37834964 |
T |
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| Q |
220 |
ttctcct |
226 |
Q |
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||||||| |
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| T |
37834963 |
ttctcct |
37834957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 12281160 - 12280991
Alignment:
| Q |
20 |
tgttcctcctattttatctagttcattcaattttcatcttgtttgtataactttgtgatattgtttttacagtttttaattgacatatcatgttaaagtt |
119 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12281160 |
tgttcctcctattttatctagttcatttaattttcatcttgtttgtataactttgtgatattgtttttacagtttttaattgacatatcatgttaaagtt |
12281061 |
T |
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| Q |
120 |
gttcattgaatagaaaatctttgtcatacgtgctatatcatgtagtctggtggaggatgttattcgttgt |
189 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
12281060 |
gttcattgaatagaaaatctttgtcatacatgctatatcatgtagtctggtggaggatgttatccgttgt |
12280991 |
T |
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