View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12953_low_32 (Length: 228)
Name: NF12953_low_32
Description: NF12953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12953_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 50250403 - 50250192
Alignment:
| Q |
1 |
tcttgttggtctaagacacttgttcttcctcctggttacttttaccctatatacactacaaaaaataatgatatcattggaaaaaatggttttcattcat |
100 |
Q |
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| T |
50250403 |
tcttgttggactaagacacttgttcttcctcctggttacttttaccctatatacactacaaaaaataatgatatcattggaaaaaatggttttcattcat |
50250304 |
T |
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| Q |
101 |
tggtcaaatacaatgaccaaggacagcagttcgggtttcatggaaactgggacgggccataccaagcggtcatgtataaagagtctttgctttcactccc |
200 |
Q |
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| T |
50250303 |
tggtcaaatacaatgaccaaggacagcagttcgggtttcatggcaactgggacgggccataccaagcggtcatgtatatagagtctttgctttcactccc |
50250204 |
T |
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| Q |
201 |
tgacaatgatca |
212 |
Q |
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|||||||||||| |
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| T |
50250203 |
tgacaatgatca |
50250192 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 21979282 - 21979212
Alignment:
| Q |
12 |
taagacacttgttcttcctcctggttacttttaccctatatacactacaaaaaataatgatatcattggaa |
82 |
Q |
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||||| |||||||||||||| | || || ||| |||| ||||| ||||||||||| ||||||||||||||| |
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| T |
21979282 |
taagaaacttgttcttcctcgttgtgacattttccctgtatactctacaaaaaattatgatatcattggaa |
21979212 |
T |
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