View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12953_low_5 (Length: 596)

Name: NF12953_low_5
Description: NF12953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12953_low_5
NF12953_low_5
[»] chr7 (18 HSPs)
chr7 (212-582)||(37665111-37665486)
chr7 (9-153)||(37665545-37665689)
chr7 (76-145)||(37666066-37666135)
chr7 (364-421)||(24188504-24188562)
chr7 (87-141)||(13931096-13931150)
chr7 (95-140)||(9662360-9662405)
chr7 (364-447)||(15074854-15074938)
chr7 (364-450)||(16200593-16200681)
chr7 (95-140)||(17286781-17286826)
chr7 (95-140)||(21736676-21736721)
chr7 (364-450)||(24061277-24061365)
chr7 (364-450)||(36174424-36174512)
chr7 (95-140)||(46001065-46001110)
chr7 (95-140)||(46001372-46001417)
chr7 (364-434)||(9877232-9877303)
chr7 (364-434)||(23102523-23102594)
chr7 (364-434)||(30388472-30388543)
chr7 (364-434)||(30806149-30806220)
[»] chr6 (13 HSPs)
chr6 (75-147)||(478647-478720)
chr6 (79-141)||(478194-478255)
chr6 (93-139)||(944486-944532)
chr6 (364-436)||(6210088-6210161)
chr6 (367-450)||(22574907-22574992)
chr6 (401-450)||(24618447-24618497)
chr6 (95-140)||(954429-954474)
chr6 (95-140)||(5686828-5686873)
chr6 (364-450)||(7545363-7545451)
chr6 (364-450)||(22997370-22997458)
chr6 (364-450)||(23790943-23791031)
chr6 (95-140)||(25119866-25119911)
chr6 (364-434)||(3294798-3294869)
[»] chr5 (17 HSPs)
chr5 (367-450)||(6735738-6735822)
chr5 (364-452)||(26065384-26065473)
chr5 (351-450)||(35241417-35241517)
chr5 (364-419)||(33735996-33736050)
chr5 (364-421)||(988749-988806)
chr5 (93-139)||(31481109-31481155)
chr5 (363-450)||(32423598-32423687)
chr5 (87-141)||(9531669-9531725)
chr5 (364-450)||(11897282-11897370)
chr5 (95-140)||(11985860-11985905)
chr5 (95-140)||(11986141-11986186)
chr5 (364-450)||(15241430-15241518)
chr5 (367-434)||(25729405-25729473)
chr5 (95-140)||(27552280-27552325)
chr5 (95-140)||(34401751-34401796)
chr5 (367-421)||(12355840-12355895)
chr5 (96-140)||(19504602-19504646)
[»] scaffold0068 (1 HSPs)
scaffold0068 (351-450)||(45931-46032)
[»] chr8 (24 HSPs)
chr8 (367-450)||(44673596-44673681)
chr8 (364-450)||(34472331-34472419)
chr8 (363-450)||(37090562-37090650)
chr8 (351-448)||(5332937-5333036)
chr8 (364-450)||(24296819-24296904)
chr8 (367-450)||(5570931-5571016)
chr8 (364-420)||(21548476-21548534)
chr8 (87-141)||(32058007-32058061)
chr8 (363-450)||(42801597-42801686)
chr8 (95-140)||(6096366-6096411)
chr8 (364-450)||(8034360-8034448)
chr8 (95-140)||(13139788-13139833)
chr8 (95-140)||(13140116-13140161)
chr8 (364-450)||(17072511-17072599)
chr8 (364-450)||(17575672-17575760)
chr8 (95-140)||(36192963-36193008)
chr8 (364-450)||(38344083-38344171)
chr8 (95-140)||(39859500-39859545)
chr8 (95-140)||(40302894-40302939)
chr8 (95-140)||(42737085-42737130)
chr8 (365-397)||(16808392-16808424)
chr8 (365-397)||(38790604-38790636)
chr8 (96-140)||(40303183-40303227)
chr8 (95-139)||(40617745-40617789)
[»] chr4 (20 HSPs)
chr4 (364-450)||(5179831-5179918)
chr4 (351-448)||(47890716-47890815)
chr4 (351-450)||(23778773-23778874)
chr4 (95-140)||(17519598-17519643)
chr4 (97-140)||(54920923-54920966)
chr4 (367-450)||(18360530-18360615)
chr4 (367-450)||(36602314-36602399)
chr4 (364-450)||(4958504-4958592)
chr4 (95-140)||(13533384-13533429)
chr4 (95-140)||(16665884-16665929)
chr4 (364-450)||(25235745-25235833)
chr4 (95-140)||(27957009-27957054)
chr4 (364-450)||(30057256-30057344)
chr4 (95-140)||(35826012-35826057)
chr4 (364-450)||(36132263-36132351)
chr4 (95-140)||(46718938-46718983)
chr4 (364-450)||(39697811-39697898)
chr4 (96-140)||(50495077-50495121)
chr4 (96-140)||(55449928-55449972)
chr4 (95-135)||(55450188-55450228)
[»] chr2 (8 HSPs)
chr2 (79-141)||(38407853-38407915)
chr2 (363-450)||(22718010-22718098)
chr2 (95-140)||(39067517-39067562)
chr2 (93-140)||(15154050-15154097)
chr2 (95-140)||(2290857-2290902)
chr2 (367-434)||(11189965-11190033)
chr2 (95-140)||(15400461-15400506)
chr2 (352-450)||(33549000-33549102)
[»] chr1 (8 HSPs)
chr1 (364-447)||(9866135-9866220)
chr1 (93-140)||(36732123-36732170)
chr1 (364-451)||(35605570-35605659)
chr1 (95-140)||(33005241-33005286)
chr1 (95-140)||(35955597-35955642)
chr1 (364-450)||(40519491-40519580)
chr1 (95-140)||(51088174-51088219)
chr1 (93-129)||(47035656-47035692)
[»] chr3 (14 HSPs)
chr3 (367-450)||(4860198-4860283)
chr3 (93-139)||(29835169-29835215)
chr3 (93-139)||(33214063-33214109)
chr3 (95-140)||(18763504-18763549)
chr3 (351-396)||(29098713-29098757)
chr3 (95-140)||(31312145-31312190)
chr3 (95-140)||(31312435-31312480)
chr3 (95-140)||(37180835-37180880)
chr3 (95-140)||(38236719-38236764)
chr3 (95-140)||(38698049-38698094)
chr3 (95-140)||(51721609-51721654)
chr3 (95-140)||(53777176-53777221)
chr3 (385-450)||(4880223-4880291)
chr3 (364-434)||(47098766-47098837)


Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 212 - 582
Target Start/End: Complemental strand, 37665486 - 37665111
Alignment:
Q  212 tccattttctaactcaagagtattattctaaaacgataattaaaaagaaataaactaccatcggattccaactcaacaaataaactctaacaaccaagtt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  37665486 tccattttctaactcaagagtattattctaaaacgataattaaaaagaaataaacaaccatctgattccaactcaacaaataaactctaacaaccaagtt 37665387  T
Q  312 gacattgtaatcataaattatatccccatgagcataact------gtagagatgttatatattatatgcaggggtcgggggttcgaaccccaacacccac 405  Q
    ||||||||||||||||||||||||||| |||   |||||      | || ||| || |||||||||||||||| |||||| ||||||||| |||| ||||    
T  37665386 gacattgtaatcataaattatatccccgtgaatttaactcaattggcagcgatattgtatattatatgcagggatcgggg-ttcgaaccc-aacatccac 37665289  T
Q  406 ttttccacaattaaatcatgtgagttctaac-actagactacttgaagtcggtccgtcttattcagaaggtttgaaaaagggtggtaggtaggaatgaat 504  Q
    || ||||| ||||||| |||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37665288 ttctccacgattaaattatgtgagttctagccactagactacttgaagtcggtccgtcttatttagaaggtttgaaaaagggtggtaggtaggaatgaat 37665189  T
Q  505 gagagagaaatccgaaggttttggcgctctgcaccgtacactcaaagaacgaacggtaaccattgccgccttctttct 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37665188 gagagagaaatccgaaggttttggcgctctgcaccgtacactcaaagaacgaacggtaaccattgccgccttctttct 37665111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 37665689 - 37665545
Alignment:
Q  9 gattattcttgcaattgccggagtgtttcttatcattaattatgtttgtcaggcattacggggtagagatttattgaaaatttggagttttgatttttgt 108  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||| ||||||||    
T  37665689 gattcttcttgcaattgtcggagtgtttcttatcattaattatgtttgtcaggcattacggggtagagatttattgagaatttgaggttttaatttttgt 37665590  T
Q  109 gtttagaagatgatttaaggtaaatataacatagatttaatggat 153  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||    
T  37665589 gtttagatgatgatttaagataaatataacatagatttaatggat 37665545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 76 - 145
Target Start/End: Original strand, 37666066 - 37666135
Alignment:
Q  76 gatttattgaaaatttggagttttgatttttgtgtttagaagatgatttaaggtaaatataacatagatt 145  Q
    |||||||| ||||||||  |||||| ||||||||||||||| | ||||| | ||||||||||| ||||||    
T  37666066 gatttattaaaaatttgaggttttggtttttgtgtttagaaaaagatttgatgtaaatataacgtagatt 37666135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 421
Target Start/End: Original strand, 24188504 - 24188562
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccca-aca-cccacttttccacaattaaat 421  Q
    |||||||||||||||||| ||||||||||||||| ||| ||||||| |||||||||||||    
T  24188504 atattatatgcaggggtc-ggggttcgaaccccagacaccccacttctccacaattaaat 24188562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 13931150 - 13931096
Alignment:
Q  87 aatttggagttttgatttttgtgtttagaagatgatttaaggtaaatataacata 141  Q
    ||||||| ||||||||||||||||||| |||| ||||| |||| || ||||||||    
T  13931150 aatttggggttttgatttttgtgtttaaaagaagatttgaggtgaacataacata 13931096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 9662360 - 9662405
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  9662360 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 9662405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 447
Target Start/End: Complemental strand, 15074938 - 15074854
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccca-acacccacttttccacaattaaatcatgtgagttcta-acactagactact 447  Q
    |||||||||||||||  ||||| |||||| |||  |||||||||| ||||||||||||| ||||||| ||||  ||||||||||||    
T  15074938 atattatatgcagggaccgggg-ttcgaatcccggacacccacttctccacaattaaattatgtgagctctagccactagactact 15074854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 450
Target Start/End: Original strand, 16200593 - 16200681
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccca-aca-cccacttttccacaattaaatcatgtgagttctaac-actagactacttga 450  Q
    |||||||||||||||||| ||||||||||||||| ||| |||| || |||||||||||||  |||||  |||| | ||||||||||||||    
T  16200593 atattatatgcaggggtc-ggggttcgaaccccagacaccccatttctccacaattaaattgtgtgatctctagctactagactacttga 16200681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 17286826 - 17286781
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  17286826 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 17286781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 21736721 - 21736676
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  21736721 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 21736676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 450
Target Start/End: Complemental strand, 24061365 - 24061277
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccc-aacac-ccacttttccacaattaaatcatgtgagttcta-acactagactacttga 450  Q
    |||||||||||||| | ||||| |||||||||| ||||| |||||| |||||||||||||  |||||| ||||  |||||||||||||||    
T  24061365 atattatatgcaggagccgggg-ttcgaaccccgaacactccacttctccacaattaaattgtgtgagctctagccactagactacttga 24061277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 450
Target Start/End: Original strand, 36174424 - 36174512
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccca-acac-ccacttttccacaattaaatcatgtgagttcta-acactagactacttga 450  Q
    |||||||||||||| | ||||| ||||||||||  |||| ||||||||||||||||||||  |||||| ||||  |||||||||||||||    
T  36174424 atattatatgcaggagccgggg-ttcgaaccccggacactccacttttccacaattaaattgtgtgagctctagccactagactacttga 36174512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 46001110 - 46001065
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  46001110 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 46001065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 46001372 - 46001417
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  46001372 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 46001417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 364 - 434
Target Start/End: Complemental strand, 9877303 - 9877232
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccca-acaccc-acttttccacaattaaatcatgtgagttcta 434  Q
    |||||||||||||||| ||||| ||||||||||  |||||| |||| |||||||||||||  |||||||||||    
T  9877303 atattatatgcaggggccgggg-ttcgaaccccggacaccccacttctccacaattaaattgtgtgagttcta 9877232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 364 - 434
Target Start/End: Complemental strand, 23102594 - 23102523
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccca-acaccc-acttttccacaattaaatcatgtgagttcta 434  Q
    |||||||||||||||| ||||| ||||||||||  |||||| |||| |||||||||||||  |||||||||||    
T  23102594 atattatatgcaggggccgggg-ttcgaaccccggacaccccacttctccacaattaaattgtgtgagttcta 23102523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 364 - 434
Target Start/End: Complemental strand, 30388543 - 30388472
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccca-acac-ccacttttccacaattaaatcatgtgagttcta 434  Q
    |||||||||||||||| | ||||||||||||||| |||| |||||| |||||||||||||  |||||| ||||    
T  30388543 atattatatgcagggg-ccggggttcgaaccccagacactccacttctccacaattaaattgtgtgagctcta 30388472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 364 - 434
Target Start/End: Original strand, 30806149 - 30806220
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccca-aca-cccacttttccacaattaaatcatgtgagttcta 434  Q
    |||||||||||||||||||| | ||||||||||  ||| ||||||| |||||||||||||  |||||||||||    
T  30806149 atattatatgcaggggtcggag-ttcgaaccccggacatcccacttctccacaattaaattgtgtgagttcta 30806220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 478647 - 478720
Alignment:
Q  75 agatttattgaaaatttg-gagttttgatttttgtgtttagaagatgatttaaggtaaatataacatagattta 147  Q
    ||||||||||| |||||  | |||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  478647 agatttattgagaatttaagggttttgatttttgtgtttagaagaagatttgaggtaaatataacatagattta 478720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 478255 - 478194
Alignment:
Q  79 ttattgaaaatttggagttttgatttttgtgtttagaagatgatttaaggtaaatataacata 141  Q
    ||||||| ||||||| |||||||||||||||||||| ||| ||||| |||| |||||||||||    
T  478255 ttattgagaatttgg-gttttgatttttgtgtttagtagaagatttgaggtgaatataacata 478194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 944486 - 944532
Alignment:
Q  93 gagttttgatttttgtgtttagaagatgatttaaggtaaatataaca 139  Q
    |||||||||||||||||||||||||| ||||| |||| |||||||||    
T  944486 gagttttgatttttgtgtttagaagaagatttgaggtgaatataaca 944532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 436
Target Start/End: Original strand, 6210088 - 6210161
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccca-acac-ccacttttccacaattaaatcatgtgagttctaac 436  Q
    |||||||||||||||| | ||||||||||||||| |||| |||||| ||||||||| |||  |||||||||||||    
T  6210088 atattatatgcagggg-ctggggttcgaaccccagacactccacttctccacaatttaattgtgtgagttctaac 6210161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 450
Target Start/End: Original strand, 22574907 - 22574992
Alignment:
Q  367 ttatatgcaggggtcgggggttcgaacccca-acac-ccacttttccacaattaaatcatgtgagttctaa-cactagactacttga 450  Q
    |||||||||||||| |||| ||||||||||  |||| |||||| |||||||||||||  |||||| ||||| |||||||||||||||    
T  22574907 ttatatgcaggggttgggg-ttcgaaccccgcacactccacttctccacaattaaattgtgtgagctctaaccactagactacttga 22574992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 24618497 - 24618447
Alignment:
Q  401 cccacttttccacaattaaatcatgtgagttcta-acactagactacttga 450  Q
    |||||||||||||||||||||  |||||||||||  |||||||||||||||    
T  24618497 cccacttttccacaattaaattgtgtgagttctagccactagactacttga 24618447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 954429 - 954474
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| ||||  ||||||||| ||||||||||    
T  954429 gttttgatttttgtgtttaaaagaaaatttaaggtgaatataacat 954474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 5686873 - 5686828
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  5686873 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 5686828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 450
Target Start/End: Original strand, 7545363 - 7545451
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccc-aacaccc-acttttccacaattaaatcatgtgagttcta-acactagactacttga 450  Q
    |||||||||||||||| | ||| |||||||||| ||||||| |||| |||||||||||||  |||||| ||||  |||||||||||||||    
T  7545363 atattatatgcaggggccaggg-ttcgaaccccgaacaccccacttctccacaattaaattgtgtgagctctagccactagactacttga 7545451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 450
Target Start/End: Original strand, 22997370 - 22997458
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccc-aacaccc-acttttccacaattaaatcatgtgagttcta-acactagactacttga 450  Q
    |||||||||| ||||||| ||||||||||||||  |||||| |||| |||||||||||||  |||||| ||||  |||||||||||||||    
T  22997370 atattatatgtaggggtc-ggggttcgaaccccggacaccctacttctccacaattaaattgtgtgagctctagccactagactacttga 22997458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 450
Target Start/End: Complemental strand, 23791031 - 23790943
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccc-aacaccc-acttttccacaattaaatcatgtgagttcta-acactagactacttga 450  Q
    |||||||||| ||||||| ||||||||||||||  |||||| |||| |||||||||||||  |||||| ||||  |||||||||||||||    
T  23791031 atattatatgtaggggtc-ggggttcgaaccccggacaccctacttctccacaattaaattgtgtgagctctagccactagactacttga 23790943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 25119911 - 25119866
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| ||||  |||| |||||||||||||||    
T  25119911 gttttgatttttgtgtttaaaagaatatttgaggtaaatataacat 25119866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 364 - 434
Target Start/End: Original strand, 3294798 - 3294869
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccc-aaca-cccacttttccacaattaaatcatgtgagttcta 434  Q
    |||||||||||||||||| ||||||||||||||  ||| ||||||| | |||||||||||  |||||||||||    
T  3294798 atattatatgcaggggtc-ggggttcgaaccccggacaccccacttcttcacaattaaattgtgtgagttcta 3294869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 367 - 450
Target Start/End: Complemental strand, 6735822 - 6735738
Alignment:
Q  367 ttatatgcaggggtcgggggttcgaacccc-aacac-ccacttttccacaattaaatcatgtgagttctaacactagactacttga 450  Q
    ||||||||||||||||||| |||||||||| ||||| |||||| |||||||||||||  |||||| ||||||||||||||||||||    
T  6735822 ttatatgcaggggtcgggg-ttcgaaccccgaacactccacttctccacaattaaattgtgtgagctctaacactagactacttga 6735738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 452
Target Start/End: Complemental strand, 26065473 - 26065384
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaaccccaaca-cccacttttccacaattaaatcatgtgagttcta-acactagactacttgaag 452  Q
    ||||||||||||||||| |||| |||||||| | ||| |||| |||||||||||||||| || |||||||||  ||||| |||||||||||    
T  26065473 atattatatgcaggggttgggg-ttcgaacctctacatcccaattttccacaattaaattatatgagttctagccactaaactacttgaag 26065384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 351 - 450
Target Start/End: Original strand, 35241417 - 35241517
Alignment:
Q  351 gtagagatgttatatattatatgcaggggtcgggggttcgaaccccaacac-ccacttttccacaattaaatcatgtgagttcta-acactagactactt 448  Q
    |||||||| ||  |||||||||||||||||| |||||||||||||  |||| |||||| ||||||||| |||  |||||||| ||  |||||||||||||    
T  35241417 gtagagatattgcatattatatgcaggggtc-ggggttcgaaccctgacactccacttctccacaatttaattgtgtgagttttagccactagactactt 35241515  T
Q  449 ga 450  Q
    ||    
T  35241516 ga 35241517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 419
Target Start/End: Complemental strand, 33736050 - 33735996
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaaccccaacacccacttttccacaattaa 419  Q
    |||||||||||||||||| |||||||||||||  ||||||| || |||||||||||    
T  33736050 atattatatgcaggggtc-ggggttcgaaccctgacacccagttctccacaattaa 33735996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 421
Target Start/End: Original strand, 988749 - 988806
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaaccccaacac-ccacttttccacaattaaat 421  Q
    |||||||||||||| | | ||||||||||||||||||| |||||| |||||||||||||    
T  988749 atattatatgcaggag-ctggggttcgaaccccaacactccacttctccacaattaaat 988806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 31481155 - 31481109
Alignment:
Q  93 gagttttgatttttgtgtttagaagatgatttaaggtaaatataaca 139  Q
    |||||||||||||||||||||||||| ||||| |||| || ||||||    
T  31481155 gagttttgatttttgtgtttagaagaagatttgaggtgaacataaca 31481109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 450
Target Start/End: Original strand, 32423598 - 32423687
Alignment:
Q  363 tatattatatgcaggggtcgggggttcgaacccca-acac-ccacttttccacaattaaatcatgtgagttcta-acactagactacttga 450  Q
    ||||||||||||||||| | ||||||| ||||||| |||| |||||| ||||||||| |||  |||||||||||  |||||||||||||||    
T  32423598 tatattatatgcagggg-ctggggttcaaaccccagacactccacttctccacaatttaattgtgtgagttctagccactagactacttga 32423687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 9531725 - 9531669
Alignment:
Q  87 aatttggagttttgatttttgtg--tttagaagatgatttaaggtaaatataacata 141  Q
    |||||||||||||||||||||||   |||||||| ||||||| ||||| ||||||||    
T  9531725 aatttggagttttgatttttgtgcaattagaagaagatttaatgtaaacataacata 9531669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 450
Target Start/End: Original strand, 11897282 - 11897370
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccc-aacac-ccacttttccacaattaaatcatgtgagttcta-acactagactacttga 450  Q
    |||||||||||||| ||| ||||||||||||||  |||| |||||| |||||||||||||  |||||| ||||  |||||||||||||||    
T  11897282 atattatatgcaggagtc-ggggttcgaaccccggacactccacttctccacaattaaattgtgtgagctctagccactagactacttga 11897370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 11985905 - 11985860
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  11985905 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 11985860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 11986141 - 11986186
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  11986141 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 11986186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 450
Target Start/End: Original strand, 15241430 - 15241518
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacc-ccaaca-cccacttttccacaattaaatcatgtgagttcta-acactagactacttga 450  Q
    |||||||||||||||||| |||||||||||| |  ||| ||||||| |||||||||||||  |||||| ||||  |||||||||||||||    
T  15241430 atattatatgcaggggtc-ggggttcgaacctcggacaccccacttctccacaattaaattgtgtgagctctagccactagactacttga 15241518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 434
Target Start/End: Complemental strand, 25729473 - 25729405
Alignment:
Q  367 ttatatgcaggggtcgggggttcgaacccca-acac-ccacttttccacaattaaatcatgtgagttcta 434  Q
    ||||||||||||||| ||||||||||||||| |||| |||||| |||||||||||||  |||||| ||||    
T  25729473 ttatatgcaggggtc-ggggttcgaaccccagacactccacttctccacaattaaattgtgtgagctcta 25729405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 27552280 - 27552325
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||||||||| |||| || |||||||    
T  27552280 gttttgatttttgtgtttaaaagatgatttgaggtgaacataacat 27552325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 34401751 - 34401796
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  34401751 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 34401796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 421
Target Start/End: Original strand, 12355840 - 12355895
Alignment:
Q  367 ttatatgcaggggtcgggggttcgaacccc-aacac-ccacttttccacaattaaat 421  Q
    ||||||||||||||||| | |||||||||| ||||| ||||||||||||||||||||    
T  12355840 ttatatgcaggggtcggag-ttcgaaccccgaacactccacttttccacaattaaat 12355895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 19504602 - 19504646
Alignment:
Q  96 ttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    |||||||||||||||||| |||| ||||| |||| ||||||||||    
T  19504602 ttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 19504646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 351 - 450
Target Start/End: Original strand, 45931 - 46032
Alignment:
Q  351 gtagagatgttatatattatatgcaggggtcgggggttcgaacccca-acac-ccacttttccacaattaaatcatgtgagttcta-acactagactact 447  Q
    |||||||| |||||||||||||||||||||| ||||||||| ||||| |||| |||||| ||||||||| |||  |||||||||||  ||||| ||||||    
T  45931 gtagagatattatatattatatgcaggggtc-ggggttcgagccccagacactccacttctccacaatttaattgtgtgagttctagccactaaactact 46029  T
Q  448 tga 450  Q
    |||    
T  46030 tga 46032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 367 - 450
Target Start/End: Complemental strand, 44673681 - 44673596
Alignment:
Q  367 ttatatgcaggggtcgggggttcgaacccca-acac-ccacttttccacaattaaatcatgtgagttcta-acactagactacttga 450  Q
    ||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||  |||||| ||||  |||||||||||||||    
T  44673681 ttatatgcaggggtcgggg-ttcgaaccccagacactccacttttccacaattaaattgtgtgagctctagccactagactacttga 44673596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 364 - 450
Target Start/End: Original strand, 34472331 - 34472419
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccca-acac-ccacttttccacaattaaatcatgtgagttctaa-cactagactacttga 450  Q
    |||||||||||||| || |||| ||||||||||| |||| ||||||||||||||||||||  |||||| ||||| |||||||||||||||    
T  34472331 atattatatgcaggagttgggg-ttcgaaccccagacactccacttttccacaattaaattgtgtgagctctaaccactagactacttga 34472419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 363 - 450
Target Start/End: Complemental strand, 37090650 - 37090562
Alignment:
Q  363 tatattatatgcaggggtcgggggttcgaaccccaacac-ccacttttccacaattaaatcatgtgagttcta-acactagactacttga 450  Q
    ||||||||||||||| ||||||| ||||||||||||||| |||| | ||||||||||||| ||||||| ||||  |||||| ||||||||    
T  37090650 tatattatatgcaggagtcgggg-ttcgaaccccaacactccacatctccacaattaaattatgtgagctctagccactaggctacttga 37090562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 448
Target Start/End: Original strand, 5332937 - 5333036
Alignment:
Q  351 gtagagatgttatatattatatgcaggggtcgggggttcgaacccc-aacac-ccacttttccacaattaaatcatgtgagttcta-acactagactact 447  Q
    |||||||| |||||||||||||||||| ||| ||||||||||||||  |||| |||||| |||||||||||||  |||||| ||||  ||||||||||||    
T  5332937 gtagagatattatatattatatgcaggagtc-ggggttcgaaccccggacactccacttctccacaattaaattgtgtgagctctagccactagactact 5333035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 450
Target Start/End: Complemental strand, 24296904 - 24296819
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaaccccaacacccacttttccacaattaaatcatgtgagttcta-acactagactacttga 450  Q
    ||||||||||||||||| |||| |||||||||  || ||||||| |||||||||||||  |||||||||||  ||||| |||||||||    
T  24296904 atattatatgcaggggttgggg-ttcgaacccacac-cccacttctccacaattaaattgtgtgagttctagccactacactacttga 24296819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 450
Target Start/End: Original strand, 5570931 - 5571016
Alignment:
Q  367 ttatatgcaggggtcgggggttcgaacccca-acaccc-acttttccacaattaaatcatgtgagttcta-acactagactacttga 450  Q
    ||||||||||||||||| | ||||||||||  |||||| |||| ||||||||||||| ||||||| ||||  |||||||||||||||    
T  5570931 ttatatgcaggggtcggag-ttcgaaccccggacaccccacttctccacaattaaattatgtgagctctagccactagactacttga 5571016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 420
Target Start/End: Complemental strand, 21548534 - 21548476
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccc-aaca-cccacttttccacaattaaa 420  Q
    ||||||||||| |||| |||||||||||||||| |||| ||||||| ||||||||||||    
T  21548534 atattatatgccggggccgggggttcgaaccccgaacaccccacttctccacaattaaa 21548476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 141
Target Start/End: Original strand, 32058007 - 32058061
Alignment:
Q  87 aatttggagttttgatttttgtgtttagaagatgatttaaggtaaatataacata 141  Q
    ||||||| ||||||||||||||||||| |||| ||||| |||| || ||||||||    
T  32058007 aatttggggttttgatttttgtgtttaaaagaagatttgaggtgaacataacata 32058061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 450
Target Start/End: Complemental strand, 42801686 - 42801597
Alignment:
Q  363 tatattatatgcaggggtcgggggttcgaacc-ccaaca-cccacttttccacaattaaatcatgtgagttctaa-cactagactacttga 450  Q
    ||||||||||| ||||||| |||||||||||| |  ||| ||||||| |||| ||||||||  |||||||||||| |||||||||||||||    
T  42801686 tatattatatgtaggggtc-ggggttcgaacctcggacaccccacttctccataattaaattgtgtgagttctaaccactagactacttga 42801597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 6096366 - 6096411
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  6096366 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 6096411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 450
Target Start/End: Complemental strand, 8034448 - 8034360
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccca-acaccc-acttttccacaattaaatcatgtgagttcta-acactagactacttga 450  Q
    |||||||||||||||| ||||| ||||||| ||| |||||| |||| |||||||||||||  |||||||||||  |||||| ||||||||    
T  8034448 atattatatgcaggggccgggg-ttcgaacaccagacaccccacttctccacaattaaattgtgtgagttctagccactaggctacttga 8034360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 13139833 - 13139788
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  13139833 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 13139788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 13140116 - 13140161
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  13140116 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 13140161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 450
Target Start/End: Complemental strand, 17072599 - 17072511
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccc-aacaccc-acttttccacaattaaatcatgtgagttcta-acactagactacttga 450  Q
    |||||||||||||||| ||||| |||||||||| ||||||| |||| |||||||||||||  |||||| ||||  |||||| ||||||||    
T  17072599 atattatatgcaggggccgggg-ttcgaaccccgaacaccccacttctccacaattaaattgtgtgagctctagccactaggctacttga 17072511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 450
Target Start/End: Original strand, 17575672 - 17575760
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccc-aaca-cccacttttccacaattaaatcatgtgagttcta-acactagactacttga 450  Q
    |||||||||||||||| | |||||||||||||| |||| ||||||| |||||||||||||  |||||| ||||  |||||| ||||||||    
T  17575672 atattatatgcagggg-ccggggttcgaaccccgaacaccccacttctccacaattaaattgtgtgagctctagccactaggctacttga 17575760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 36192963 - 36193008
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  36192963 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 36193008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 450
Target Start/End: Original strand, 38344083 - 38344171
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccca-acac-ccacttttccacaattaaatcatgtgagttcta-acactagactacttga 450  Q
    |||||||||||||| | | ||||||||||||||| |||| |||||| |||||||||||||  |||||| ||||  |||||||||||||||    
T  38344083 atattatatgcaggag-ctggggttcgaaccccagacactccacttctccacaattaaattgtgtgagctctagccactagactacttga 38344171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 39859500 - 39859545
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  39859500 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 39859545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 40302939 - 40302894
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  40302939 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 40302894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 42737085 - 42737130
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  42737085 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 42737130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 397
Target Start/End: Complemental strand, 16808424 - 16808392
Alignment:
Q  365 tattatatgcaggggtcgggggttcgaacccca 397  Q
    |||||||||||||||| ||||||||||||||||    
T  16808424 tattatatgcaggggtggggggttcgaacccca 16808392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 397
Target Start/End: Complemental strand, 38790636 - 38790604
Alignment:
Q  365 tattatatgcaggggtcgggggttcgaacccca 397  Q
    ||||||||||||||| |||||||||||||||||    
T  38790636 tattatatgcaggggccgggggttcgaacccca 38790604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 40303183 - 40303227
Alignment:
Q  96 ttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    |||||||||||||||||| |||| ||||| |||| ||||||||||    
T  40303183 ttttgatttttgtgtttaaaagaagattttaggtgaatataacat 40303227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 40617789 - 40617745
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataaca 139  Q
    ||||||||||||||||||| |||| ||||| |||| |||||||||    
T  40617789 gttttgatttttgtgtttaaaagaagatttgaggtgaatataaca 40617745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 450
Target Start/End: Complemental strand, 5179918 - 5179831
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccca-acac-ccacttttccacaattaaatcatgtgagttctaacactagactacttga 450  Q
    |||||||||||||| | ||||| ||||||||||  |||| |||||| |||||||||||||  |||||| ||||||||||||||||||||    
T  5179918 atattatatgcaggagccgggg-ttcgaaccccggacactccacttctccacaattaaattgtgtgagctctaacactagactacttga 5179831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 448
Target Start/End: Original strand, 47890716 - 47890815
Alignment:
Q  351 gtagagatgttatatattatatgcaggggtcgggggttcgaacccca-acac-ccacttttccacaattaaatcatgtgagttctaa-cactagactact 447  Q
    |||||||| ||  |||||||||||||||||| ||||||||||||||| |||| |||||| |||||||||||||  |||||| ||||| |||||| |||||    
T  47890716 gtagagatattgcatattatatgcaggggtc-ggggttcgaaccccagacactccacttctccacaattaaattgtgtgagctctaaccactaggctact 47890814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 450
Target Start/End: Complemental strand, 23778874 - 23778773
Alignment:
Q  351 gtagagatgttatatattatatgcaggggtcgggggttcgaacccca-acaccc-acttttccacaattaaatcatgtgagttctaa-cactagactact 447  Q
    |||| ||| ||| ||||||||||||||||| |||| ||||||||||| |||||| |||| |||||||||||||  |||||| ||||| ||||| ||||||    
T  23778874 gtagggatattacatattatatgcaggggttgggg-ttcgaaccccagacaccccacttctccacaattaaattgtgtgagctctaaccactaaactact 23778776  T
Q  448 tga 450  Q
    |||    
T  23778775 tga 23778773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 17519598 - 17519643
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||    
T  17519598 gttttgatttttgtgtttaaaagaagatttgaggtaaatataacat 17519643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 140
Target Start/End: Original strand, 54920923 - 54920966
Alignment:
Q  97 tttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||| |||| ||||| |||||||||||||||    
T  54920923 tttgatttttgtgtttaaaagaagatttgaggtaaatataacat 54920966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 450
Target Start/End: Original strand, 18360530 - 18360615
Alignment:
Q  367 ttatatgcaggggtcgggggttcgaacccca-acac-ccacttttccacaattaaatcatgtgagttctaa-cactagactacttga 450  Q
    ||||||||||||| ||||| ||||||||||  |||| |||||| |||||||||||||  |||||||||||| |||| ||||||||||    
T  18360530 ttatatgcaggggccgggg-ttcgaaccccggacactccacttctccacaattaaattgtgtgagttctaaccactggactacttga 18360615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 450
Target Start/End: Complemental strand, 36602399 - 36602314
Alignment:
Q  367 ttatatgcaggggtcgggggttcgaacccca-acac-ccacttttccacaattaaatcatgtgagttctaa-cactagactacttga 450  Q
    ||||||||||||| ||||| ||||||||||  |||| |||||| |||||||||||||  |||||||||||| |||| ||||||||||    
T  36602399 ttatatgcaggggccgggg-ttcgaaccccggacactccacttctccacaattaaattgtgtgagttctaaccactggactacttga 36602314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 450
Target Start/End: Complemental strand, 4958592 - 4958504
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccca-acac-ccacttttccacaattaaatcatgtgagttctaa-cactagactacttga 450  Q
    |||||||||||||| ||||||| ||||||||||  |||| |||||| ||||||||||||| ||||||| | ||| ||||| |||||||||    
T  4958592 atattatatgcaggagtcgggg-ttcgaaccccggacactccacttctccacaattaaattatgtgagctttaaccactaaactacttga 4958504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 13533384 - 13533429
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  13533384 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 13533429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 16665929 - 16665884
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  16665929 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 16665884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 450
Target Start/End: Complemental strand, 25235833 - 25235745
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccca-acac-ccacttttccacaattaaatcatgtgagttctaac-actagactacttga 450  Q
    |||||||||||||||| | ||||||||||||||| |||| |||||| ||||||||| |||  ||||||||||| | ||||| ||||||||    
T  25235833 atattatatgcagggg-ctggggttcgaaccccagacactccacttctccacaatttaattgtgtgagttctagctactaggctacttga 25235745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 27957054 - 27957009
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  27957054 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 27957009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 450
Target Start/End: Original strand, 30057256 - 30057344
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccc-aaca-cccacttttccacaattaaatcatgtgagttctaa-cactagactacttga 450  Q
    |||||||||||||||||| ||||||| ||||||  ||| ||||||| |||||||||||||  |||||| ||||| |||||| ||||||||    
T  30057256 atattatatgcaggggtc-ggggttcaaaccccggacaccccacttctccacaattaaattgtgtgagctctaaccactaggctacttga 30057344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 35826012 - 35826057
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  35826012 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 35826057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 450
Target Start/End: Original strand, 36132263 - 36132351
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccca-acac-ccacttttccacaattaaatcatgtgagttctaa-cactagactacttga 450  Q
    |||||||||||||| ||||||| ||||||||||  |||| |||||| |||||||||||||  |||||| ||||| |||||| ||||||||    
T  36132263 atattatatgcaggagtcgggg-ttcgaaccccggacactccacttctccacaattaaattgtgtgaggtctaaccactaggctacttga 36132351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 46718983 - 46718938
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  46718983 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 46718938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 364 - 450
Target Start/End: Complemental strand, 39697898 - 39697811
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaaccccaaca-cccacttttccacaattaaatcatgtgagttctaac-actagactacttga 450  Q
    |||||||||||||||||| ||||||||||  | |||| ||||||| | |||||||||||  |||||| |||||| ||||||||| ||||    
T  39697898 atattatatgcaggggtc-ggggttcgaattcgaacaccccacttcttcacaattaaattgtgtgagctctaactactagactatttga 39697811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 50495077 - 50495121
Alignment:
Q  96 ttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||||||| ||||| || | ||||||||||    
T  50495077 ttttgatttttgtgtttagaagaagatttgagctgaatataacat 50495121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 55449972 - 55449928
Alignment:
Q  96 ttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    |||||||||||||||||| |||| ||||| |||| ||||||||||    
T  55449972 ttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 55449928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 55450188 - 55450228
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatat 135  Q
    ||||||||||||||||||| |||| ||||| ||||||||||    
T  55450188 gttttgatttttgtgtttaaaagacgatttgaggtaaatat 55450228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 38407853 - 38407915
Alignment:
Q  79 ttattgaaaatttggagttttgatttttgtgtttagaagatgatttaaggtaaatataacata 141  Q
    ||||||| ||||||  |||||||||||||||||||||||| ||||| |||| || ||||||||    
T  38407853 ttattgagaatttgaggttttgatttttgtgtttagaagaagatttgaggtgaacataacata 38407915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 363 - 450
Target Start/End: Complemental strand, 22718098 - 22718010
Alignment:
Q  363 tatattatatgcaggggtcgggggttcgaacccc-aacac-ccacttttccacaattaaatcatgtgagttctaacactagactacttga 450  Q
    ||||||||||||||| | | |||||||||||||| ||||| |||||| |||||||||||||| |||||| ||||  ||||| ||||||||    
T  22718098 tatattatatgcaggag-ctggggttcgaaccccgaacactccacttctccacaattaaatcgtgtgagctctacaactaggctacttga 22718010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 39067562 - 39067517
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||    
T  39067562 gttttgatttttgtgtttaaaagaagatttgaggtaaatataacat 39067517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 15154050 - 15154097
Alignment:
Q  93 gagttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  15154050 gagttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 15154097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 2290902 - 2290857
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  2290902 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 2290857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 434
Target Start/End: Original strand, 11189965 - 11190033
Alignment:
Q  367 ttatatgcaggggtcgggggttcgaacccca-aca-cccacttttccacaattaaatcatgtgagttcta 434  Q
    |||||||||||||||||||| |||||||||| ||| ||||||| |||||||||||||  |||||| ||||    
T  11189965 ttatatgcaggggtcggggg-tcgaaccccagacatcccacttctccacaattaaattgtgtgagctcta 11190033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 15400461 - 15400506
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  15400461 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 15400506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 450
Target Start/End: Complemental strand, 33549102 - 33549000
Alignment:
Q  352 tagagatgttatatattatatgcaggggtcgggggttcgaaccccaa-cacc-cacttttccacaattaaatcatgtgagttctaa---cactagactac 446  Q
    ||||||| || ||||||||||||||| | | |||||||||||||||| |||  ||||| |||||||||||||  |||||| |||||   |||||||||||    
T  33549102 tagagatattgtatattatatgcaggag-ctggggttcgaaccccaaacacttcacttctccacaattaaattgtgtgagctctaactgcactagactac 33549004  T
Q  447 ttga 450  Q
    ||||    
T  33549003 ttga 33549000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 447
Target Start/End: Complemental strand, 9866220 - 9866135
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaa-ccccaacac-ccacttttccacaattaaatcatgtgagttcta-acactagactact 447  Q
    |||||||||||||||||| |||||||||| ||| ||||| ||||||||||||||||||||  |||||| ||||  ||||||||||||    
T  9866220 atattatatgcaggggtc-ggggttcgaatcccgaacactccacttttccacaattaaattgtgtgagctctagccactagactact 9866135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 36732123 - 36732170
Alignment:
Q  93 gagttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  36732123 gagttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 36732170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 451
Target Start/End: Complemental strand, 35605659 - 35605570
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaaccc-caaca-cccacttttccacaattaaatcatgtgagttctaac-actagactacttgaa 451  Q
    |||||||||||||||||| |||||||||||||  |||| ||||||| |||||||||||||  |||||| |||| | ||||| |||||||||    
T  35605659 atattatatgcaggggtc-ggggttcgaaccctaaacaccccacttctccacaattaaattgtgtgagctctagctactaggctacttgaa 35605570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 33005241 - 33005286
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  33005241 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 33005286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 35955642 - 35955597
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  35955642 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 35955597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 450
Target Start/End: Complemental strand, 40519580 - 40519491
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccc-aacac-ccacttttccacaattaaatcatgtgagttcta-acactagactacttga 450  Q
    |||||||||||||| | ||||||||||||||||  |||| |||||| |||||||||||||  |||||| ||||  |||||| ||||||||    
T  40519580 atattatatgcaggagccgggggttcgaaccccggacactccacttctccacaattaaattgtgtgagctctagccactaggctacttga 40519491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 51088174 - 51088219
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  51088174 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 51088219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 47035656 - 47035692
Alignment:
Q  93 gagttttgatttttgtgtttagaagatgatttaaggt 129  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  47035656 gagttttgatttttgtgtttagaagaagatttgaggt 47035692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 450
Target Start/End: Original strand, 4860198 - 4860283
Alignment:
Q  367 ttatatgcaggggtcgggggttcgaacccca-acaccc-acttttccacaattaaatcatgtgagttctaa-cactagactacttga 450  Q
    ||||||||||||| | | ||||||||||||| |||||| |||| |||||||||||||  |||||| ||||| |||||||||||||||    
T  4860198 ttatatgcagggg-ctgaggttcgaaccccagacaccccacttctccacaattaaattgtgtgagctctaaccactagactacttga 4860283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 29835169 - 29835215
Alignment:
Q  93 gagttttgatttttgtgtttagaagatgatttaaggtaaatataaca 139  Q
    |||||||||||||||||||||||||| ||||| |||| || ||||||    
T  29835169 gagttttgatttttgtgtttagaagaagatttgaggtgaacataaca 29835215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 33214109 - 33214063
Alignment:
Q  93 gagttttgatttttgtgtttagaagatgatttaaggtaaatataaca 139  Q
    |||||||||||||||||||||||||| ||||| |||| || ||||||    
T  33214109 gagttttgatttttgtgtttagaagaagatttgaggtgaacataaca 33214063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 18763504 - 18763549
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  18763504 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 18763549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 396
Target Start/End: Original strand, 29098713 - 29098757
Alignment:
Q  351 gtagagatgttatatattatatgcaggggtcgggggttcgaacccc 396  Q
    |||||||| || ||||||||||||||||||| ||||||||||||||    
T  29098713 gtagagatattgtatattatatgcaggggtc-ggggttcgaacccc 29098757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 31312190 - 31312145
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  31312190 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 31312145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 31312435 - 31312480
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  31312435 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 31312480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 37180835 - 37180880
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||| ||||||||||| |||| |||||||||| ||||||||||    
T  37180835 gttttgaattttgtgtttaaaagaagatttaaggtgaatataacat 37180880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 38236764 - 38236719
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  38236764 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 38236719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 38698094 - 38698049
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  38698094 gttttgatttttgtgtttaaaagaagatttgaggtgaatataacat 38698049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 51721609 - 51721654
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||| ||||||||||||| |||| |||||||||| ||||||||||    
T  51721609 gttttaatttttgtgtttaaaagaagatttaaggtgaatataacat 51721654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 53777176 - 53777221
Alignment:
Q  95 gttttgatttttgtgtttagaagatgatttaaggtaaatataacat 140  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||    
T  53777176 gttttgatttttgtgtttaaaagaagatttgaggttaatataacat 53777221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 450
Target Start/End: Original strand, 4880223 - 4880291
Alignment:
Q  385 ggttcgaacccca-acaccc-acttttccacaattaaatcatgtgagttctaa-cactagactacttga 450  Q
    ||||||||||||| |||||| |||| |||||||||||||  |||||| ||||| |||||||||||||||    
T  4880223 ggttcgaaccccagacaccccacttctccacaattaaattgtgtgagctctaaccactagactacttga 4880291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 364 - 434
Target Start/End: Original strand, 47098766 - 47098837
Alignment:
Q  364 atattatatgcaggggtcgggggttcgaacccca-acac-ccacttttccacaattaaatcatgtgagttcta 434  Q
    |||||||||||||||| | ||||||||||||||| |||| |||||| |||||||||||||  |||||| ||||    
T  47098766 atattatatgcagggg-ccggggttcgaaccccagacactccacttctccacaattaaattgtgtgagctcta 47098837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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