View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12953_low_6 (Length: 596)
Name: NF12953_low_6
Description: NF12953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12953_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 20 - 586
Target Start/End: Complemental strand, 16963569 - 16962989
Alignment:
| Q |
20 |
gctaacaacaaattaggacctggatttccttcatttttgttctctcttcctttgctagagaacctaaacttggcttcaaatcaatttaatggttcatttt |
119 |
Q |
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| T |
16963569 |
gctaacaacaaattaggacctggatttccttcatttctgttctctcttcctttgattcagaagctaaacttggcttcaaatcaatttaatggttcatttt |
16963470 |
T |
|
| Q |
120 |
ctatgaatatatcttgtggctcttctctaacatttgttgatatctcaaacaattctctggaaggaaaatttccatcttgcattgattctacgttgtcgtt |
219 |
Q |
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| T |
16963469 |
ctatgaatatatcttgtggttcttctctaacatttgttgatatctcaaacaattctctagaaggaaaattgccatcatgcattgattcgacattgtcgtt |
16963370 |
T |
|
| Q |
220 |
gaatcggacaatagtttattctggtaattgtttgtctgcaagatatgtcagtgatcaacattcatcttcacattgcaagaatttaacagtgttagccgct |
319 |
Q |
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| T |
16963369 |
gaatcgaacaatagtttattctggtaattgtttatcagcaagaaatgtcagtgatcaacattcatcttcacattgcaagaattcaacggtgttagccgct |
16963270 |
T |
|
| Q |
320 |
aaggcaagatttcagaagccgaaaaaatcagagatgcaactaggagtattatttggtattat------------tggaattgtagggcttttgattctac |
407 |
Q |
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| T |
16963269 |
aagccgagatttgagaagccgaaaaaatcaatgatgcagctaggagtattatttggtattattggaggttttgttggaattgtagggcttttgattctac |
16963170 |
T |
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| Q |
408 |
tctttctgttcattttgagaaagtccaaagcagaaagagaagatagatctgttgatatttcaagagaatcaagactaaatatttatgcaagtaaggccat |
507 |
Q |
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| T |
16963169 |
tctttctgttcattttgagaaagtccaaagcagaaagagaagatagatctgttgatatttcaagagaatcaagactaaatatttatgcaagtaaggccat |
16963070 |
T |
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| Q |
508 |
aattacatacacataaacatttcatat--tagtgcacaagttaaatttagatcatatttttcatttcatattagtcctttg |
586 |
Q |
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| T |
16963069 |
aattacatacacataaacatttcatattgtagtgcacaagttaaatttagatcatatttttcatttcatattagtcctttg |
16962989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 20 - 511
Target Start/End: Complemental strand, 16216314 - 16215792
Alignment:
| Q |
20 |
gctaacaacaaattaggacctggatttccttcatttttgttctctcttcctttgctagagaacctaaacttggcttcaaatcaatttaatggttcatttt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
16216314 |
gctaacaacaaattaggacctggatttccttcatttttgatctctcttcctttgatacagaacctaaacctggcttcaaatcaatttaatggttcatttt |
16216215 |
T |
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| Q |
120 |
ctatgaatatatcttgtggctcttctctaacatttgttgatatctcaaacaattctctggaaggaaaatttccatcttgc----attgattctacgttgt |
215 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| |||||||| ||||||| |
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| T |
16216214 |
ctatgaatatatcttgtggttcttctctaacatttgttgatatctcaaacaattctctagaaggaaaattgccatcatgcattaattgattcgacgttgt |
16216115 |
T |
|
| Q |
216 |
cgttgaatcggacaatagtttattctggtaattgtttgtctgcaagatatgtcagtgatcaacattcatcttcacattgcaagaatttaacagtgttagc |
315 |
Q |
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|| | ||||| ||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
16216114 |
cggttaatcgaacaatagtttattctggtaattgtttgtcagcaagaaatatcagtgatcaacattcatcttcacattgcaagaattcaacagtgttagc |
16216015 |
T |
|
| Q |
316 |
cgctaaggcaagatttcagaagccgaaaaaatcagagatgcaactaggagtattatttggtattattgg------------aattgtagggcttttgatt |
403 |
Q |
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| T |
16216014 |
cgctgagacgagatttgataagccgaaaaaatcaatgatgcaactaggagtattatttggtattattggaggttttgttgtaattgtagggcttttgatt |
16215915 |
T |
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| Q |
404 |
ctactctttctgttcattttgagaaagtccaaagcagaaagagaag---------------atagatctgttgatatttcaagagaatcaagactaaata |
488 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
16215914 |
ctactctttctgttcattttgagaaagtctaaagcagaaagagaagatagtaaaatagatcatagatctgttgatatttcaagagaatcaagaccaaata |
16215815 |
T |
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| Q |
489 |
tttatgcaagtaaggccataatt |
511 |
Q |
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|||||||||||||||||| |||| |
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| T |
16215814 |
tttatgcaagtaaggccacaatt |
16215792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 383 - 436
Target Start/End: Complemental strand, 48892080 - 48892027
Alignment:
| Q |
383 |
ggaattgtagggcttttgattctactctttctgttcattttgagaaagtccaaa |
436 |
Q |
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| T |
48892080 |
ggaattgcagggcttttgattatattttttctgttcattttgagaaagtccaaa |
48892027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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