View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12953_low_7 (Length: 572)
Name: NF12953_low_7
Description: NF12953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12953_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 14 - 563
Target Start/End: Complemental strand, 47422796 - 47422247
Alignment:
| Q |
14 |
tcaacattattgttgcttctgtttattacacttgtagtagacttgaggtttatgagtgccaacacttcatctcttggccaccttctcctatcctctaatt |
113 |
Q |
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| T |
47422796 |
tcaacattattgttgcttctgtttattacacttgtagtagacttgaggtttatgagtgccaacacttcatctcttggccaccttctcctatcctctaatt |
47422697 |
T |
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| Q |
114 |
tctccattattgtaggcacaacaagggtagaagtggaatttgagtactctgtgtcacttgagctagggttttgatctgctatcacattagaaaaaggtgt |
213 |
Q |
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| T |
47422696 |
tctccattattgtaggcacaacaagggtagaagtggaatttgagtactctgtgtcacttgagctagggttttgatctgctatcacattagaaaaaggtgt |
47422597 |
T |
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| Q |
214 |
ttttgattctagattgttagaaggattactagggttttgtgggtgcaattgtgtagaagaagaagaagaatatcccgtggctagatatttgttcaagaat |
313 |
Q |
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| T |
47422596 |
ttttgattctagattgttagaaggattattagggttttgtgggtgcaattgtgtagaagaagaagaagaatatcctgtggctagatatttgttcaagaat |
47422497 |
T |
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| Q |
314 |
tcaatgatgttggcttgtctatcacttgcaatagcttgttgttcttgtaccatcatgttcatcctttcaatctcttgttttttccatgtttcctctctat |
413 |
Q |
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| T |
47422496 |
tcaatgatgttggcttgtctatcacttgcaatagcttgttgttcttgtaccatcatgttcatcctttcaatctcttgttttttccatgtttcctctctat |
47422397 |
T |
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| Q |
414 |
caagcttttcttgatctcttttgagcatgtcttcaagtagcttattgtgtatttcttcttgttgtgctattattttgttaaccactgtctcacaaaaact |
513 |
Q |
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| T |
47422396 |
caagcttttcttgatctcttttgagcatgtcttcaagtagcttattgtgtatttcttcttgttgtgctattattttattaaccactgtctcacaaaaact |
47422297 |
T |
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| Q |
514 |
cttcaacatttcaaatctatcacggcgcctcttcctctttttgtcctttg |
563 |
Q |
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| T |
47422296 |
cttcaacatttcaaatctatcacggcgcctcttcctctttttgttctttg |
47422247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 383 - 535
Target Start/End: Original strand, 36127974 - 36128126
Alignment:
| Q |
383 |
atctcttgttttttccatgtttcctctctatcaagcttttcttgatctcttttgagcatgtcttcaagtagcttattgtgtatttcttcttgttgtgcta |
482 |
Q |
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| T |
36127974 |
atctcttgtttcttccaagcttcttctctactaaacttctcttcatctcttttaaccatatcttcaataagcttgttgtgcatttcttcttgttgatcca |
36128073 |
T |
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| Q |
483 |
ttattttgttaaccactgtctcacaaaaactcttcaacatttcaaatctatca |
535 |
Q |
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| T |
36128074 |
tcattttctttacaacactctcacaaaaacccttaaacacttcaaatctatca |
36128126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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