View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12953_low_8 (Length: 555)
Name: NF12953_low_8
Description: NF12953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12953_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 49758475 - 49758174
Alignment:
| Q |
1 |
tctactcaattcagtttgcgtgtaccatgccttaggagggggtaaagtaaatgaatcaacgaaattatctattctgaattaatggccaagacaattgagg |
100 |
Q |
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| T |
49758475 |
tctactcaattcagtttgcgtgtaccatgccttaggagggg-taaagtaaatgaatcaacgaaattatctattctgaattaatggccaagacaattgagg |
49758377 |
T |
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| Q |
101 |
tttagacaatctcaataagtgtttacccaataaaaatagaactgcatttcacaataataagttggtaaatatgacgttatactacaaatattacaaaaaa |
200 |
Q |
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| T |
49758376 |
tttagacaatctcaaaaagtgtttacccaataaaaatagaactgcatttcacaataataagttggtaaatatgacgttatactacaaatattacaaaaaa |
49758277 |
T |
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| Q |
201 |
ttgcatcttcttcccttgaccggcgagtgctgcttattttgctgccagacgtatataaatctcatctgatatatatatctaatttgattcaaaacaagtc |
300 |
Q |
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| T |
49758276 |
ttgcatcttcttcccttgaccggcgagtgctgcttattttgctgccagacgtatataaatctcatctgatatatatatctaatttgatccaaaacaagtc |
49758177 |
T |
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| Q |
301 |
aag |
303 |
Q |
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||| |
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| T |
49758176 |
aag |
49758174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 367 - 545
Target Start/End: Complemental strand, 49758110 - 49757932
Alignment:
| Q |
367 |
ccacagctgtactgacctatgctgcagctgcacctttgtccccatcaccaaataatctttgcttgaaatcagcgaccattagaggaagtccctcacggag |
466 |
Q |
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| T |
49758110 |
ccacagctgtactgacctatgctgcagctgcacctttgtccccatcaccaaataatctttgcttgaaatcagcgaccattagaggaagtccctcacggag |
49758011 |
T |
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| Q |
467 |
ggacacagatggttgccagccaagaagctcttttgctttggagatgtctggctttctcttatgtggatcatcctctgtg |
545 |
Q |
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| T |
49758010 |
ggacacagatggttgccagccaagaagctcttttgctttggagatgtctggctttctcttatgtggatcatcctctgtg |
49757932 |
T |
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