View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12954_high_14 (Length: 331)
Name: NF12954_high_14
Description: NF12954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12954_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 9 - 313
Target Start/End: Complemental strand, 17166376 - 17166072
Alignment:
| Q |
9 |
cacaccctccaacccctcttcctcaccaaacccacctccacccacaaccgtaaactcaccacaaaactccaagtctcatcctcaccaacaaacaagccca |
108 |
Q |
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| T |
17166376 |
cacaccctccaacccctcttcctcacaaaacccacctccacccacagccgtaaactcaccacaaaactccaagtctcatcctcaccaacaaacaagccca |
17166277 |
T |
|
| Q |
109 |
gaaccccaatcacatccacacaaccaccacctcaaaagcccaatgcagaaaccatcttcttcgacggtggagctcattacggagacctcatcaccaacct |
208 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17166276 |
caaccccaatcacatccagacaaccaccacctcaaaagcccaatgcagaaaccatcttcttcgacggtggagctcattacggagacctcatcaccaacct |
17166177 |
T |
|
| Q |
209 |
cctcctagggttcactcttgtatggctccccttaacactagcagcagtttcacgtgcactttacctacgttacaggttcacaaacctaagagtgagtgtt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17166176 |
cctcctagggttcactcttgtatggctccccttaacactagcagcagtttcacgtgcactttacctacgttacaggttcacaaacctaagagtgagtgtt |
17166077 |
T |
|
| Q |
309 |
atatc |
313 |
Q |
| |
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||||| |
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| T |
17166076 |
atatc |
17166072 |
T |
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