View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12954_high_16 (Length: 307)
Name: NF12954_high_16
Description: NF12954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12954_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 42450345 - 42450047
Alignment:
| Q |
1 |
tctctacaggaggctgagaggcggaatgatatagcaagagctgcaagcctacgatatggtgcgattgatgatgtggaagatgcaattcaacgacttgaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42450345 |
tctctacaggaggctgagaggcggaatgatatagcaagagctgcaagcctacgatatggtgcgattgatgatgtggaagatgcaattcaacgacttgaag |
42450246 |
T |
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| Q |
101 |
atagcaccgataagagcttgatgttgacaaaa---------ccagacctaatagctttggttgttagcctattgacgggtataccagtgtcccgacttgg |
191 |
Q |
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| T |
42450245 |
atagcaccgataaaagcttgatgttgacaaaaactgttgaaccagacctaataggtttggttgttagcctattgacgggtataccagtgtcccgacttag |
42450146 |
T |
|
| Q |
192 |
cgaaaatgagaaagaaatgtttcttggacttggtgacaggttacacaaaagagtagtgggacaagatcatgcagtaaatgccgttgctaatgctgtatt |
290 |
Q |
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| T |
42450145 |
tgaaaatgagaaagaaaggtttcttggacttggtgacaggttacacaaaagagtagtgggacaagatcatgcagtaaatgccgttgctaacactgtatt |
42450047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 743097 - 742791
Alignment:
| Q |
1 |
tctctacaggaggctgagaggcggaatgatatagcaagagctgcaagcctacgatatggtgcgattgatgatgtggaagatgcaattcaacgacttgaag |
100 |
Q |
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|||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||| | |||| || |
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| T |
743097 |
tctctacaggaggctgagaggcggcatgatatagaaagagctgcaagtctacgatatggtgcgattgatgacgtggaagatgcaattcagctgcttggag |
742998 |
T |
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| Q |
101 |
atagcaccgataagagcttgatgttgacaaaaccag-----------------acctaatagctttggttgttagcctattgacgggtataccagtgtcc |
183 |
Q |
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| T |
742997 |
atagcactgatgagagcttaatgttgacagaaactgctgtgctggagtacaaaacctaattgctatggttgttagcctattgaccggcataccagtgacc |
742898 |
T |
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| Q |
184 |
cgacttggcgaaaatgagaaagaaatgtttcttggacttggtgacaggttacacaaaagagtagtgggacaagatcatgcagtaaatgccgttgctaatg |
283 |
Q |
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| | ||||||||||||||||||||| |||||||||| ||||||||||||| || || ||||| |||||||||||||| |||||||||| ||||||||| | |
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| T |
742897 |
caaattggcgaaaatgagaaagaaaggtttcttggaattggtgacaggttgcataatagagttgtgggacaagatcaagcagtaaatgacgttgctaacg |
742798 |
T |
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| Q |
284 |
ctgtatt |
290 |
Q |
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||||||| |
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| T |
742797 |
ctgtatt |
742791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 10045680 - 10045762
Alignment:
| Q |
4 |
ctacaggaggctgagaggcggaatgatatagcaagagctgcaagcctacgatatggtgcgattgatgatgtggaagatgcaat |
86 |
Q |
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| T |
10045680 |
ctacaagaggctgagaggcggtatgatctagccagagctgcagacctacgatatggtgcaattgaagaggtggaaaatgcaat |
10045762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 266
Target Start/End: Original strand, 10045847 - 10045963
Alignment:
| Q |
150 |
ggttgttagcctattgacgggtataccagtgtcccgacttggcgaaaatgagaaagaaatgtttcttggacttggtgacaggttacacaaaagagtagtg |
249 |
Q |
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||||||||||| || ||| |||||||||||| | || | ||| ||||||| ||||||| ||| |||||||||| ||||| || || | ||||| ||| |
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| T |
10045847 |
ggttgttagccgatggaccggtataccagtgactcgtttaggccaaaatgataaagaaaggttggttggacttggagacagattgcatactagagttgtg |
10045946 |
T |
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| Q |
250 |
ggacaagatcatgcagt |
266 |
Q |
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| T |
10045947 |
ggacaagaccaagcagt |
10045963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 150 - 290
Target Start/End: Original strand, 45467700 - 45467840
Alignment:
| Q |
150 |
ggttgttagcctattgacgggtataccagtgtcccgacttggcgaaaatgagaaagaaatgtttcttggacttggtgacaggttacacaaaagagtagtg |
249 |
Q |
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||||||||||| || ||| |||||||||||| | | || ||| |||||||||||| || ||| |||||||||||||||| | |||| ||||| ||| |
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| T |
45467700 |
ggttgttagccgatggactggtataccagtgactaggctcggccaaaatgagaaagcaaggttggttggacttggtgacagactgcacactagagtcgtg |
45467799 |
T |
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| Q |
250 |
ggacaagatcatgcagtaaatgccgttgctaatgctgtatt |
290 |
Q |
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| T |
45467800 |
ggacaagaccaagcggttaatgctgttgctgaggctgtatt |
45467840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 45467533 - 45467616
Alignment:
| Q |
4 |
ctacaggaggctgagaggcggaatgatatagcaagagctgcaagcctacgatatggtgcgattgatgatgtggaagatgcaatt |
87 |
Q |
| |
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||||||||||| ||||||||| ||||| ||||||||||||| ||| ||||||||||| ||||| || |||||| ||||||| |
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| T |
45467533 |
ctacaggaggcagagaggcggtatgatctagcaagagctgcggacctgcgatatggtgcaattgaagaggtggaaactgcaatt |
45467616 |
T |
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