View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12954_high_17 (Length: 277)
Name: NF12954_high_17
Description: NF12954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12954_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 48 - 264
Target Start/End: Complemental strand, 18161946 - 18161741
Alignment:
| Q |
48 |
atgcttcaaaccaatgtacgataaataataaaatcgcattcaaaagaagattaaaaaa-tcattatttattaccacaagtaagaacaattttctgcattt |
146 |
Q |
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| T |
18161946 |
atgcttcaaaccaatgtacgataaataataaaatcgcaatcaaaagaagattaaaaaaatcattatttattaccacaagtaagaacaattctctgcattt |
18161847 |
T |
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| Q |
147 |
gaacctatacacattcatcaacaaattgaaaaccaaaatcctaacaaaactaaaatcaaaattaattctcaacttattcatcatctctaaggtttgataa |
246 |
Q |
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| T |
18161846 |
gaacctatacacactcatcaacaaattgaaaaccaaaatcctaac------------aaaattaattctcaacttattcatcatctctaaggtttgataa |
18161759 |
T |
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| Q |
247 |
agaatcatttcaaccacc |
264 |
Q |
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|||||||||||||||||| |
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| T |
18161758 |
agaatcatttcaaccacc |
18161741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 231
Target Start/End: Complemental strand, 18158092 - 18157961
Alignment:
| Q |
100 |
aaaaaatcattatttattaccacaagtaagaacaattttctgcatttgaacctatacacattcatcaacaaattgaaaaccaaaatcctaacaaaactaa |
199 |
Q |
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| T |
18158092 |
aaaaaatcaatatttattgccactagaaaaaccaattttgtgcatttgcacctatacatatcattcaacaacttgaaaatcaaaatcctaacaaaactaa |
18157993 |
T |
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| Q |
200 |
aatcaaaattaattctcaacttattcatcatc |
231 |
Q |
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| T |
18157992 |
caacaaaattaattctcaacttcatcatcatc |
18157961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 201
Target Start/End: Complemental strand, 52897641 - 52897540
Alignment:
| Q |
100 |
aaaaaatcattatttattaccacaagtaagaacaattttctgcatttgaacctatacacattcatcaacaaattgaaaaccaaaatcctaacaaaactaa |
199 |
Q |
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|||||||||||| ||| | ||||| ||||||||||||| ||||||| ||| ||||| || |||||||||||||||||||||| ||||||||||||| |
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| T |
52897641 |
aaaaaatcattacttactcccacatataagaacaattttgtgcattttcaccgatacatatcattcaacaaattgaaaaccaaaattctaacaaaactaa |
52897542 |
T |
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| Q |
200 |
aa |
201 |
Q |
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|| |
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|
| T |
52897541 |
aa |
52897540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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