View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12954_high_20 (Length: 246)
Name: NF12954_high_20
Description: NF12954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12954_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 18161202 - 18161431
Alignment:
| Q |
1 |
tcttggtgaacacattcacacagggtatggttgtgatcgatggagcttcaaaccttgaagagcttttcaacaaccttgtgagtgccacaaagactggtca |
100 |
Q |
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| T |
18161202 |
tcttggtgaacacattcacacagggtatggttgtgatcgatggagcttcaagccttgaagagcttttcaacaaccttgggagtgccacaaagactggtca |
18161301 |
T |
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| Q |
101 |
accaccggcaacaaaggagtctatagaagctatggagaaggttgagattgaagaaggtgatggaggagagtgtgttgtttgtttagaggaatttgaggtt |
200 |
Q |
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| T |
18161302 |
accaccggcaacaaaggagtctatagaagctatggagaagattgagattgaagaaggtgatggaggagagtgtgttgtttgtttggaggagtttgaggtt |
18161401 |
T |
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| Q |
201 |
ggtggggttgtgaaggagatgccttgtaag |
230 |
Q |
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| T |
18161402 |
ggtggggttgtgaaggagatgccttgtaag |
18161431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 36 - 230
Target Start/End: Original strand, 18157523 - 18157717
Alignment:
| Q |
36 |
atcgatggagcttcaaaccttgaagagcttttcaacaaccttgtgagtgccacaaagactggtcaaccaccggcaacaaaggagtctatagaagctatgg |
135 |
Q |
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| T |
18157523 |
atcgatggagcttcaagcattgaagaactctttaacaaccttggaagttctacaaagaatggtcaaccaccggctacgaaggagtctatagaagctatgg |
18157622 |
T |
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| Q |
136 |
agaaggttgagattgaagaaggtgatggaggagagtgtgttgtttgtttagaggaatttgaggttggtggggttgtgaaggagatgccttgtaag |
230 |
Q |
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| T |
18157623 |
acaagattgagattgaagaaggtgatggtggtgagtgtgttgtttgtttggaggaatttgaggttggtggggttgtgaaggagatgccttgtaag |
18157717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 52896680 - 52896745
Alignment:
| Q |
113 |
aaaggagtctatagaagctatggagaaggttgagattgaagaaggtgatggaggagagtgtgttgt |
178 |
Q |
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| T |
52896680 |
aaaggagtctatagaagatatgaagaaggttgagattgaagaagatgatggcggagagggtgttgt |
52896745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 52896591 - 52896681
Alignment:
| Q |
1 |
tcttggtgaacacattcacacagggtatggttgtgatcgatggagcttcaaaccttgaagagcttttcaacaaccttgtgagtgccacaaa |
91 |
Q |
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| T |
52896591 |
tcttggtgacccctttcacacatggtatggttgtgattgatggagcttcaaggcttgtcgaactcttcaacaaccttggaagtgctacaaa |
52896681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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