View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12954_high_22 (Length: 237)
Name: NF12954_high_22
Description: NF12954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12954_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 199
Target Start/End: Complemental strand, 4460763 - 4460597
Alignment:
| Q |
43 |
caatgttaaaatttacacaatattcttt-aactatttattaaac---------caaatatatgaactgcgttaacaatgtaataaagaaatgaacggtgt |
132 |
Q |
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| T |
4460763 |
caatgttaaaatttacacgatattcttttaactatttattaaacgtcattaaccaaatatatgaactgcgttaacaatataataaagaaatgaacggtgt |
4460664 |
T |
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| Q |
133 |
taggtgtnnnnnnnncaatgttaattaacggtttaaggcgacattttatatctttaggacacaatta |
199 |
Q |
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| T |
4460663 |
taggtgtaaaaaaaacaatgttaattaacggtttaaagcgacattttatatctttagggcaaaatta |
4460597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4460827 - 4460778
Alignment:
| Q |
1 |
gcgtaatatttgcaatgtgttaatgaagaaatga-aaaataaacaatgtt |
49 |
Q |
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| T |
4460827 |
gcgtaatatttgcaatgtgttaatgaagaaatgaaaaaataaacaatgtt |
4460778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 4468956 - 4468907
Alignment:
| Q |
150 |
atgttaattaacggtttaaggcgacattttatatctttaggacacaatta |
199 |
Q |
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| T |
4468956 |
atgttaattaacagtttaaggcgccgttttatatctttaggccacaatta |
4468907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 4469079 - 4468990
Alignment:
| Q |
43 |
caatgttaaaatttacacaatattctttaactatttattaaa---------ccaaatatatgaactgcgttaacaatgtaataaagaaat |
123 |
Q |
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| T |
4469079 |
caatgttaaaatttattcgatattctataactatttattaaatgtaattaaccaaatatataaactgccttaacaatgtaataaacaaat |
4468990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 4469138 - 4469094
Alignment:
| Q |
6 |
atatttgcaatgtgttaatgaagaaatga-aaaataaacaatgtt |
49 |
Q |
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| T |
4469138 |
atatttgaaatgttttaatgaagaaatgaaaaaataaacaatgtt |
4469094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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