View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12954_high_3 (Length: 587)
Name: NF12954_high_3
Description: NF12954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12954_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 41657583 - 41657201
Alignment:
| Q |
19 |
caggagtcatcttgattatttgtttgttacaattaaaacaataatagaatgacgataacatacaaa---gttggcgtaatgagaacccaaaatttggcat |
115 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41657583 |
caggagtcatcttgattatgtgtttgttacaattaaaacaataatagaatgacggtaacatacaaattagttggcgtaatgagaacccaaaatttggcat |
41657484 |
T |
|
| Q |
116 |
cagtttgccaatatgaaaatgtaagaaatataagtcatgtttcactttggcatgattgacagtttggaacaaaaaacatct---taaacaacaaaagtgc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
41657483 |
cagtttgccaatatgaaaatgtaagaaatataagtcatgtttcactttggcatgattgacagattggaacaaaaaacatcttaataaacaacaaaagtgc |
41657384 |
T |
|
| Q |
213 |
acaccctaaatttaagtagttaaaacatgggtgacaatttagatttaatctatgtaatttggattnnnnnnnncataatatgcgtatatttgaattgttt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41657383 |
acaccctaaatttaagtagttaaaacatgggtgacaatttagatttgatctatgtaatttggattaaaaaaaacataatatgcgtatatttgaattgttt |
41657284 |
T |
|
| Q |
313 |
gaattgaatctaatggccaccaatgcacttactttaaggaatccatttttgtgttttaaattgtgatccacaactattattgc |
395 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41657283 |
gaactgaatctaatggccaccaatgcacttactttaaggaatccatttttgtgttttaaattgtgatccacaactattattgc |
41657201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 393 - 587
Target Start/End: Complemental strand, 41657171 - 41656977
Alignment:
| Q |
393 |
tgcaactatagccagcccaattgcacgtaagccatattcattcgcaatttttaacaatcacaattcacaaggatcgcaatgtttgtagtttctgcaattc |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41657171 |
tgcaactatagccagcccaattgcacgtaagccagattcattcgcaatttttaacaatcacaattcacaaggatcgcaatgtttgtagtttctgcaattc |
41657072 |
T |
|
| Q |
493 |
aatgacatgcttggtttgaagacaacacaccttcttaactttattatctgtttttattttctctacacaagtaagtaattgaaaataataaaata |
587 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41657071 |
aatgacatgcttggtttgaagacaacacaccttcttaactttattatctgtttttattttctctacacaagtaagtaattgaaaataataaaata |
41656977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 393 - 587
Target Start/End: Original strand, 43223433 - 43223626
Alignment:
| Q |
393 |
tgcaactatagccagcccaattgcacgtaagccatattcattcgcaatttttaacaatcacaattcacaaggatcgcaatgtttgtagtttctgcaattc |
492 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43223433 |
tgcaactatagc-agctcaattgcacgtaagccggattcattcgcaattttttacaatcacaattcacaaggatcacaatgtttgtagtttctgcaattc |
43223531 |
T |
|
| Q |
493 |
aatgacatgcttggtttgaagacaacacaccttcttaactttattatctgtttttattttctctacacaagtaagtaattgaaaataataaaata |
587 |
Q |
| |
|
|||| ||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43223532 |
aatggcattcttggtttgaagaccacacacctttttaactttattatctgtttttattttctctacacaagtaagtaattgaaaataataaaata |
43223626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 41651439 - 41651341
Alignment:
| Q |
76 |
acatacaaagttggcgtaatgagaacccaaaatttggcatcagtttgccaatatgaaaatgtaagaaatataagtcatgtttcactttggcatgattga |
174 |
Q |
| |
|
||||||||| ||||| ||||||| || ||||||||||||| |||||||||||||| |||||||| ||| | || |||||||| | |||||||||||||| |
|
|
| T |
41651439 |
acatacaaaattggcataatgagcactcaaaatttggcattagtttgccaatatgcaaatgtaaaaaacagaattcatgtttgattttggcatgattga |
41651341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 347 - 394
Target Start/End: Original strand, 43223355 - 43223402
Alignment:
| Q |
347 |
taaggaatccatttttgtgttttaaattgtgatccacaactattattg |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||| ||||| |
|
|
| T |
43223355 |
taaggaatccatttttgtgttttaaattgtgatcaacagctactattg |
43223402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 43226691 - 43226790
Alignment:
| Q |
76 |
acatacaaagttggcgtaatgagaacccaaaatttggcatcagtttgccaatatgaaaatgt-aagaaatataagtcatgtttcactttggcatgattga |
174 |
Q |
| |
|
||||| ||| ||||| ||||||| || |||||||||||| ||| |||||||||| |||||| || ||||| || |||||||| | |||||||||||||| |
|
|
| T |
43226691 |
acataaaaaattggcataatgagcacttaaaatttggcattagtgtgccaatatgcaaatgtaaaaaaatagaattcatgtttgattttggcatgattga |
43226790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 43205461 - 43205509
Alignment:
| Q |
81 |
caaagttggcgtaatgagaacccaaaatttggcatcagtttgccaatat |
129 |
Q |
| |
|
|||||||||| |||||| || ||||||||||||||||||||||||||| |
|
|
| T |
43205461 |
caaagttggcataatgaatactcaaaatttggcatcagtttgccaatat |
43205509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 562
Target Start/End: Original strand, 43212659 - 43212750
Alignment:
| Q |
470 |
aatgtttgtagtttctgcaattcaatgacatgcttggtttgaagacaacacaccttcttaactttattatctgtttttattttctctacacaa |
562 |
Q |
| |
|
|||||||||||||||||||||| ||| | ||||| | ||| ||||||||| ||| | |||| ||||| | |||||| ||||||||||||||| |
|
|
| T |
43212659 |
aatgtttgtagtttctgcaatttaat-agatgctcgatttcaagacaacataccgttttaatcttattttttgttttcattttctctacacaa |
43212750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 451 - 512
Target Start/End: Original strand, 43227095 - 43227154
Alignment:
| Q |
451 |
cacaattcacaaggatcgcaatgtttgtagtttctgcaattcaatgacatgcttggtttgaa |
512 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||| || |||| |||||||||||||| |
|
|
| T |
43227095 |
cacaattcacaaggatcataatgtttgtagtttcagcactttaatg--atgcttggtttgaa |
43227154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 25928955 - 25929016
Alignment:
| Q |
74 |
taacatacaaagttggcgtaatgagaacccaaaatttggcatcagtttgccaatatgaaaat |
135 |
Q |
| |
|
||||||||||| ||||| || ||| || |||||||||||||||||||||||||||| |||| |
|
|
| T |
25928955 |
taacatacaaaattggcacaaagagcactcaaaatttggcatcagtttgccaatatgcaaat |
25929016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University