View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12954_high_4 (Length: 585)
Name: NF12954_high_4
Description: NF12954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12954_high_4 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 527; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 14 - 585
Target Start/End: Original strand, 40111653 - 40112224
Alignment:
| Q |
14 |
aaatacacatactttcgagtggaaccaaggatccacccacactaataaacaatgtatacgttctattaaatatccaaaataaccccatggaaaaatccaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40111653 |
aaatacacatactttcgagtggaaccaaggatccacccacactaataaacaatgtatacgttctattaaatatccaaaataaccccatggaaaaatccaa |
40111752 |
T |
|
| Q |
114 |
aatttttcatatggtattgagagatacaaataatacagacttctttcttctacaaaagccacgattagaaaagcatattaagattaatcaacaatgaatt |
213 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40111753 |
aatttttcatatggtatttagagatacaaataatacagacttctttcttctacaaaagccacgattagaaaagcatattaagattaatcaacaatgaatt |
40111852 |
T |
|
| Q |
214 |
ggtccaagtggtaaggaactcaaatcccttaagcatgtcgttaattggatcatgcttatggagaaaaaatctgttgggcggggagaatccaccttatgtg |
313 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40111853 |
gttccaagtggtaaggaactcaaatcccttaagcatgtcgttaattggatcatgcgtatggagaaaaaatctgttgggcggggagaatccaccttatgtg |
40111952 |
T |
|
| Q |
314 |
ccctatatgttttcgaacgagattagttattgttaaacggtggtggaaacttctaaccaatataatggtnnnnnnntaaccatgattaaaaacaaatgaa |
413 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40111953 |
ccctatatgttttcgacggagattagttattgttaaacggcggtggaaacttctaaccaatataatggtaaaaaaataaccatgattaaaaacaaatgaa |
40112052 |
T |
|
| Q |
414 |
tataaatagcaacatagcttgcaccggatgttgcatgcagttcttaccaactgggcttcaaatttgcagcaacgtagaaccaataaccagatgttccaat |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40112053 |
tataaatagcaacatagcttgcaccggatgttgcatgcagttcttaccaactgggcttcaaatttgcagcaacgtagaaccaataaccagatgttccaat |
40112152 |
T |
|
| Q |
514 |
aatcaaagcattcttggaaccgagaatccgcaccaccaaagaagcaaacacagagaaaaatgtgaaagacaa |
585 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40112153 |
aatcaaagcattcttggaaccgagaatccgcaccaccaaagaagcaaacacagagaaaaatgtgaaagacaa |
40112224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 456 - 584
Target Start/End: Original strand, 40149794 - 40149922
Alignment:
| Q |
456 |
cttaccaactgggcttcaaatttgcagcaacgtagaaccaataaccagatgttccaataatcaaagcattcttggaaccgagaatccgcaccaccaaaga |
555 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40149794 |
cttaccaattgggcttcaaatttgcagccacgtataaccaataaccagatgttccgataatcaaagcattcttggatccgagaatccgcaccaccaaaga |
40149893 |
T |
|
| Q |
556 |
agcaaacacagagaaaaatgtgaaagaca |
584 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |
|
|
| T |
40149894 |
agcaaacacagaaaaaaatgtaaaagaca |
40149922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 457 - 585
Target Start/End: Original strand, 40156168 - 40156296
Alignment:
| Q |
457 |
ttaccaactgggcttcaaatttgcagcaacgtagaaccaataaccagatgttccaataatcaaagcattcttggaaccgagaatccgcaccaccaaagaa |
556 |
Q |
| |
|
||||||| ||||||||||||||||||| | ||| ||||||||||| || ||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40156168 |
ttaccaattgggcttcaaatttgcagccaggtataaccaataacccgaagttccaacaatcaaagcattcttggatccgagaatccgcaccaccaaagaa |
40156267 |
T |
|
| Q |
557 |
gcaaacacagagaaaaatgtgaaagacaa |
585 |
Q |
| |
|
||||||||||| |||||||| |||||||| |
|
|
| T |
40156268 |
gcaaacacagaaaaaaatgtaaaagacaa |
40156296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 43460320 - 43460271
Alignment:
| Q |
202 |
caacaatgaattggtccaagtggtaaggaactcaaatcccttaagcatgt |
251 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| || ||||||||||||| |
|
|
| T |
43460320 |
caacaatggattggtccaagtggtaagggacttgaaccccttaagcatgt |
43460271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 330 - 382
Target Start/End: Complemental strand, 32729359 - 32729307
Alignment:
| Q |
330 |
acgagattagttattgttaaacggtggtggaaacttctaaccaatataatggt |
382 |
Q |
| |
|
||||||||||| |||||||| |||| ||||||||||| |||||||| ||||| |
|
|
| T |
32729359 |
acgagattagtcattgttaagcggttgtggaaacttcataccaatatcatggt |
32729307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University