View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12954_high_5 (Length: 546)
Name: NF12954_high_5
Description: NF12954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12954_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 458
Target Start/End: Complemental strand, 36680146 - 36680082
Alignment:
| Q |
394 |
acagacagagcaagcaaaggaagttctcaatgccgggtgttcagagctactacatactgacatca |
458 |
Q |
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| T |
36680146 |
acagacagagcaagcaaaggaagttctcaacgccgggtgttcagagctactacatactgacatca |
36680082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 456 - 501
Target Start/End: Complemental strand, 36686740 - 36686695
Alignment:
| Q |
456 |
tcacatggaatgttgtttaaaaatggtcacgtgttattcttcattt |
501 |
Q |
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| T |
36686740 |
tcacatggaatgttgtttataaatggtcacgtgttattcttcattt |
36686695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 132
Target Start/End: Complemental strand, 36672221 - 36672178
Alignment:
| Q |
89 |
ctatccatgtgaagatttgaactctataattaaggatcaagata |
132 |
Q |
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| T |
36672221 |
ctatccatgtgaggatttgaactctataactaagtatcaagata |
36672178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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