View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12954_high_6 (Length: 525)
Name: NF12954_high_6
Description: NF12954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12954_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 16 - 515
Target Start/End: Original strand, 45514535 - 45515034
Alignment:
| Q |
16 |
caactggacactgcaaacaatacagctctcaaaaaatcaagttcaacatgggaaaagtagcatatagatcaaaagaatcatttcttaagagattattctc |
115 |
Q |
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| T |
45514535 |
caactggacactgcaaacaatacagctctcaaaaaatcaagttcaacatgggaaaagtagcatatagatcaaaagaatcatttcttaagagattattctc |
45514634 |
T |
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| Q |
116 |
attaaggatgaagtagtttacttgtttttatgcaggagtgaagaatatgcagttgatatattcaccaaacacatcaaattgcattcgtttatgaagttaa |
215 |
Q |
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| T |
45514635 |
attaaggatgaagtagtttacttgtttttatgcaggagtgaagaatatgcagttgatatattcaccaaacacatcaaattgcattcgtttatgaagttaa |
45514734 |
T |
|
| Q |
216 |
gacaatcctttggcatttgtatttctctagtactctagtaaaagatgtattttttctgcctannnnnnnctcatgttgttttgtaacagtaacttcggaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45514735 |
gacaatcctttggcatttgtatttctctagtactctagtaaaagatgtattttttctgcctatttttttctcatgttgttttgtaacagtaacttcggaa |
45514834 |
T |
|
| Q |
316 |
aaatgtaacataaccaacactctacatatgtaaaccatagtgatacatgtatgaatggttatattttcttatttgaaatgtaacattcaattagacaaat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45514835 |
aaatgtaacataaccaacactctacatatgtaaaccatagtgatacatgtatgaatggttatattttcttatttgaaatgtaacattcaattagacaaat |
45514934 |
T |
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| Q |
416 |
aatgtcaacaaattattggccattttggcttataataacaacgatgaaaataaagctttaacagaattttattgtcgggacaatgctgtagccctctctg |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
45514935 |
aatgtcaacaaattattggccattttggcttataataacaacgatgaaaataaagctttaacagaattttattgccgggacaatgttgtagccctctctg |
45515034 |
T |
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