View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12954_low_10 (Length: 410)

Name: NF12954_low_10
Description: NF12954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12954_low_10
NF12954_low_10
[»] chr2 (4 HSPs)
chr2 (148-267)||(39765395-39765514)
chr2 (19-112)||(39765297-39765390)
chr2 (311-400)||(39765558-39765647)
chr2 (325-377)||(39759397-39759449)


Alignment Details
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 148 - 267
Target Start/End: Original strand, 39765395 - 39765514
Alignment:
Q  148 tcactctaaaattaaaagatatagacagcnnnnnnngaatatacaaataaatcacgtttcacatttataaacaagggaaatcatgtttctcattgtttca 247  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39765395 tcactctaaaattaaaagatatagacagcaaaaaaagaatatacaaataaatcacgtttcacatttataaacaagggaaatcatgttcctcattgtttca 39765494  T
Q  248 tgaatcatgataaatatact 267  Q
    ||||||||||||||||||||    
T  39765495 tgaatcatgataaatatact 39765514  T

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Target: chr2; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 39765297 - 39765390
Alignment:
Q  19 gtatagcaatgctgttttcaatattatgacatgatgaactcatgtgaaaagtgttaacggtacatgtcagcacaaaaattcaattttcaaaatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39765297 gtatagcaatgctgttttcaatattatgacatgatgaactcatgtgaaaagtgttaacggtacatgtcagcacaaaaattcaattttcaaaatt 39765390  T

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Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 311 - 400
Target Start/End: Original strand, 39765558 - 39765647
Alignment:
Q  311 caatgatacgaggaaacactatacctcaggtgccgtgtttctgggtgatctacggtcagtgactttggagcttttgtcgtttgatgatgt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39765558 caatgatacgaggaaacactatacctcaggtgccgtgtttctgggtgatctacggtcagtgactttggagcttttgtcgtttgatgatgt 39765647  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 377
Target Start/End: Original strand, 39759397 - 39759449
Alignment:
Q  325 aacactatacctcaggtgccgtgtttctgggtgatctacggtcagtgactttg 377  Q
    |||| |||||||||||| ||||| ||||||||||||||  ||| |||||||||    
T  39759397 aacaatatacctcaggtaccgtgcttctgggtgatctaatgtcggtgactttg 39759449  T

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