View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12954_low_11 (Length: 385)
Name: NF12954_low_11
Description: NF12954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12954_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 6 - 367
Target Start/End: Original strand, 1843295 - 1843656
Alignment:
| Q |
6 |
agagagaagaagtcttgctatgcattttctatcttgcttgaaaaacgataatgtgtttgaagttattcaagatggtatgtggaatgaagaaaacaaacaa |
105 |
Q |
| |
|
|||||||||||||||||| ||| |||| |||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1843295 |
agagagaagaagtcttgcaatgaatttactatcttgattgaaaaaagataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaa |
1843394 |
T |
|
| Q |
106 |
gagatcatggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatga |
205 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1843395 |
gagatcaaggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatga |
1843494 |
T |
|
| Q |
206 |
ggttaatgaataagcactcttggatcaacgatgactcaaatgtagaggagagtaggtacttgcttcatgaatcatcatctagcctttatgaacctggtga |
305 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1843495 |
ggttaatgaataagcactcttggatcaaagatgactcaaatgtagaggagagtaggtacttgcttcatgaatcatcatctagcatttatgaacctggtga |
1843594 |
T |
|
| Q |
306 |
tagcatcacacatggagatatcggatatgacagcttgaaagaccatgtactaatagcattgg |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1843595 |
tagcatcacacatggagatatcggatatgacagcttgaaagaccatgtactgatagcattgg |
1843656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 10 - 367
Target Start/End: Original strand, 1857310 - 1857667
Alignment:
| Q |
10 |
agaagaagtcttgctatgcattttctatcttgcttgaaaaacgataatgtgtttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagaga |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1857310 |
agaagaagtcttgctatgcattttctatcttgcttgaaaaaggataatgtatttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagaga |
1857409 |
T |
|
| Q |
110 |
tcatggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggtt |
209 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1857410 |
tcaaggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggtt |
1857509 |
T |
|
| Q |
210 |
aatgaataagcactcttggatcaacgatgactcaaatgtagaggagagtaggtacttgcttcatgaatcatcatctagcctttatgaacctggtgatagc |
309 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1857510 |
aatgaataagcactcttggatcaaagatgactcaaatgtagaggagagtaggtacttgcttcatgaatcatcatctagcatttatgaacctggtgatagc |
1857609 |
T |
|
| Q |
310 |
atcacacatggagatatcggatatgacagcttgaaagaccatgtactaatagcattgg |
367 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||| || ||||| ||| |||||| |
|
|
| T |
1857610 |
aacaaacatggagatatcggatatgacagcttgaaagatcacgtactgataacattgg |
1857667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 10 - 367
Target Start/End: Original strand, 1868908 - 1869265
Alignment:
| Q |
10 |
agaagaagtcttgctatgcattttctatcttgcttgaaaaacgataatgtgtttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagaga |
109 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| |||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1868908 |
agaagaagtcttgcaatgcatttactatcttgattgaaaaaagataatgtatttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagaga |
1869007 |
T |
|
| Q |
110 |
tcatggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggtt |
209 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1869008 |
tcaaggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggtt |
1869107 |
T |
|
| Q |
210 |
aatgaataagcactcttggatcaacgatgactcaaatgtagaggagagtaggtacttgcttcatgaatcatcatctagcctttatgaacctggtgatagc |
309 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1869108 |
aatgaataagcactcttggatcaatgatgactcaaatgtagaggagagtcggttcttgcttcatgaatcatcatctagcttttatgaacctggtgatagc |
1869207 |
T |
|
| Q |
310 |
atcacacatggagatatcggatatgacagcttgaaagaccatgtactaatagcattgg |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1869208 |
atcacacatggagatatcggatatgacagcttgaaagaccatgtactgatagcattgg |
1869265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 6 - 306
Target Start/End: Complemental strand, 1815738 - 1815437
Alignment:
| Q |
6 |
agagagaagaagtcttgctatgcattttctatcttgcttgaaaaacgataatgtgtttgaagttattcaagatggtatgtggaatgaagaaaacaaacaa |
105 |
Q |
| |
|
|||||||||||||||||||| ||| ||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1815738 |
agagagaagaagtcttgctacgcactttttatcttgcttgaaaaaggataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaa |
1815639 |
T |
|
| Q |
106 |
gagatcatggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatga |
205 |
Q |
| |
|
| |||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1815638 |
gtgatcatggaggtggctgttcttgcggcgaactgtttgagacttataggggaggaaagaccaagcatgaaggaagtggctatggaattggagggaatga |
1815539 |
T |
|
| Q |
206 |
ggttaatgaataagcactcttggatcaacgatgactcaaatgtagaggagagt-aggtacttgcttcatgaatcatcatctagcctttatgaacctggtg |
304 |
Q |
| |
|
|||||||| ||||||||||||||||||| | ||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
1815538 |
ggttaatggataagcactcttggatcaatgcagaccttaatgtagaggagagtccactacttgcttcatgaatcatcatctagcatttatgaatttggtg |
1815439 |
T |
|
| Q |
305 |
at |
306 |
Q |
| |
|
|| |
|
|
| T |
1815438 |
at |
1815437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 9161550 - 9161353
Alignment:
| Q |
16 |
agtcttgctatgcattttctatcttgcttgaaaaacgataatgtgtttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagagatcatgg |
115 |
Q |
| |
|
|||||||||||||| ||| | ||||| || ||| | |||| | ||||||| |||||||| |||||| | ||||| |||||||| | ||||| | || |
|
|
| T |
9161550 |
agtcttgctatgcactttttgtcttgtttaaaacaagatagaatttttgaagctattcaagttggtattttaaatgatgaaaacaaggaggagattaagg |
9161451 |
T |
|
| Q |
116 |
aggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatg |
213 |
Q |
| |
|
|||| ||| ||||||| || | |||||||||||| |||||||| ||||| || ||||||||||||||||| ||||| ||||| || || ||||||||| |
|
|
| T |
9161450 |
aggttgctattcttgcagcaaggtgtttgagactaagaggggatgaaaggcctagcatgaaggaagtggcaatggagttggatggtataaggttaatg |
9161353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 9199943 - 9199746
Alignment:
| Q |
16 |
agtcttgctatgcattttctatcttgcttgaaaaacgataatgtgtttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagagatcatgg |
115 |
Q |
| |
|
|||||||||||||| ||| | ||||| || ||| | ||||| | ||||| | |||||||| ||| || | | |||| |||||||| ||||||| | || |
|
|
| T |
9199943 |
agtcttgctatgcactttttgtcttgtttaaaacaagataaactttttgatgctattcaagttggaattttggatgatgaaaacaagaaagagattaagg |
9199844 |
T |
|
| Q |
116 |
aggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatg |
213 |
Q |
| |
|
|||| ||| ||||||| || | |||||| ||||||||||| || |||||||| || |||| |||||| |||||||| ||||| || || ||||||||| |
|
|
| T |
9199843 |
aggttgctattcttgctgcaaggtgtttaagacttagaggtgatgaaagacctagtatgagggaagtagctatggagttggatggtataaggttaatg |
9199746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 9118902 - 9119097
Alignment:
| Q |
16 |
agtcttgctatgcattttctatcttgcttgaaaaacgataatgtgtttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagagatcatgg |
115 |
Q |
| |
|
|||||||||||||| || | ||||| || ||| | ||||| | ||||||| |||||||| ||| || | |||||| || ||||| ||||||| | || |
|
|
| T |
9118902 |
agtcttgctatgcacttcttgtcttgtttaaaacaagataaactttttgaagctattcaagttggaattttgaatgatgataacaaggaagagattaagg |
9119001 |
T |
|
| Q |
116 |
aggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaa |
211 |
Q |
| |
|
|||| ||| ||||||| || | ||||||||||||| |||| || |||||||| || ||||||||| | |||||||| ||||| || || ||||||| |
|
|
| T |
9119002 |
aggttgctattcttgcagcaaggtgtttgagacttcgaggagaggaaagacctagtatgaaggaaatagctatggagttggatggtataaggttaa |
9119097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 9218459 - 9218262
Alignment:
| Q |
16 |
agtcttgctatgcattttctatcttgcttgaaaaacgataatgtgtttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagagatcatgg |
115 |
Q |
| |
|
|||||||||||||| ||| | ||||| || ||| | ||||| | ||||| | |||||||| ||| || | ||||| |||||||| ||||||| | || |
|
|
| T |
9218459 |
agtcttgctatgcactttttgtcttgtttaaaacaagataaactttttgatgctattcaagttggaattttcaatgatgaaaacaagaaagagattaagg |
9218360 |
T |
|
| Q |
116 |
aggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatg |
213 |
Q |
| |
|
|||| || ||||||| || | |||||| ||||||||||| || |||||||| || |||| |||||| |||||||| ||||| || || ||||||||| |
|
|
| T |
9218359 |
aggtttctattcttgctgcaaggtgtttaagacttagaggtgatgaaagacctagtatgagggaagtagctatggagttggatggcataaggttaatg |
9218262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 56 - 229
Target Start/End: Complemental strand, 9229304 - 9229131
Alignment:
| Q |
56 |
atgtgtttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagagatcatggaggtggctgttcttgcggcgaagtgtttgagacttagagg |
155 |
Q |
| |
|
|||||| ||||||| |||||| |||||| | |||||| || ||||| | ||||| | ||| || ||| ||||||| || | ||| |||||||||| ||| |
|
|
| T |
9229304 |
atgtgtctgaagttcttcaagttggtattttgaatgatgagaacaaggaggagattaaggaagttgctattcttgctgcaaggtgcttgagacttaaagg |
9229205 |
T |
|
| Q |
156 |
ggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatgaataagcactcttgga |
229 |
Q |
| |
|
|| |||||||| |||||||| |||||||||||||| | ||||| | ||||||||| | |||||| |||||| |
|
|
| T |
9229204 |
cgaggaaagacctagcatgaaagaagtggctatggagctagaggggttaaggttaatggagaagcacccttgga |
9229131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 9170376 - 9170179
Alignment:
| Q |
16 |
agtcttgctatgcattttctatcttgcttgaaaaacgataatgtgtttgaagttattcaagatggtatgtg-gaatgaagaaaacaaacaagagatcatg |
114 |
Q |
| |
|
|||||||||||||| ||| | ||||| || ||| | ||||| | ||||||| |||||||| ||| || || ||| || || ||||| ||||||| | | |
|
|
| T |
9170376 |
agtcttgctatgcactttttgtcttgtttaaaacaagataaattttttgaagctattcaagttgg-atttgtgaacgatgataacaagaaagagattaag |
9170278 |
T |
|
| Q |
115 |
gaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaatgaggttaatg |
213 |
Q |
| |
|
||||| ||| ||||||| | | |||||| |||||||||||||| |||||||| | |||||||||||||| ||||| ||||| || || ||||||||| |
|
|
| T |
9170277 |
gaggttgctattcttgcttcaaggtgtttaagacttagaggggatgaaagaccttgtatgaaggaagtggcaatggagttggatggcataaggttaatg |
9170179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University