View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12954_low_2 (Length: 618)
Name: NF12954_low_2
Description: NF12954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12954_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 202 - 601
Target Start/End: Complemental strand, 30758085 - 30757689
Alignment:
| Q |
202 |
cgggggtgcttcgaatttctaagtggaagcgagatttcaatactcattcacaaaggcaaactcatgcgtaggtttagatcaggctactggagcaacctca |
301 |
Q |
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| T |
30758085 |
cgggggtgcttcgaatttctaagtggaagcgagatttcaatactcattcacaaaggcaaactcatgcctaggtttagatcaggctactggagcaacctca |
30757986 |
T |
|
| Q |
302 |
gaagtattggcaggataaaactcgttgaaattgcaggtgtgattgtgactcgtttgaatattgataatgctacaaaacaacatgtgtttcgtaattatgc |
401 |
Q |
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| T |
30757985 |
gaagtattggcaggataaaactcgttgaaattgcaggtgtgattgtgactcgtttgaatattgataatgctacaaaacaacatgtgtttcgtaattatgc |
30757886 |
T |
|
| Q |
402 |
tcgtgtcttatttgatgttgatttttccctccgtatctttgatgaaataatggttgaaagagacggctttgcatttaaattgggagtagcttatgaatgg |
501 |
Q |
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| T |
30757885 |
tcgtgtcttagttgatgttgatttttccctccatatctttgatgaaataatggttgaaagagatggctttgcatttaaattgggagtagcttatgaatgg |
30757786 |
T |
|
| Q |
502 |
cttctagaatttttctctcac-cgctaaatgatttattggtcacaacgtgcttgcacttggctcaaacataagatggctgttgacaaggttgataagatt |
600 |
Q |
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| T |
30757785 |
cttctagaatttttctctcacttgctaaatg----attggtcacaacgtgcttgcacttggctcaaacataagatggttgttgacaaggttgataagatt |
30757690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 18161116 - 18161225
Alignment:
| Q |
19 |
cctttcacattcatcttcaaacaacaccaacccagatcatagttccgattcccatgccacggaagattccaccgctgacagaatcatcttggtgaacaca |
118 |
Q |
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| T |
18161116 |
cctttcacattcatcttcaaacaacacagacccagatcatagttccgattcccatgccacggaagattccaccactgacagaatcatcttggtgaacaca |
18161215 |
T |
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| Q |
119 |
ttcacacagg |
128 |
Q |
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|||||||||| |
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| T |
18161216 |
ttcacacagg |
18161225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 458
Target Start/End: Original strand, 2178544 - 2178610
Alignment:
| Q |
392 |
gtaattatgctcgtgtcttatttgatgttgatttttccctccgtatctttgatgaaataatggttga |
458 |
Q |
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| T |
2178544 |
gtaattatgctcgtgttttagttgacattgatttttcacaccgtatatttgatgaaattatggttga |
2178610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 484
Target Start/End: Complemental strand, 20600549 - 20600479
Alignment:
| Q |
414 |
tgatgttgatttttccctccgtatctttgatgaaataatggttgaaagagacggctttgcatttaaattgg |
484 |
Q |
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| T |
20600549 |
tgatattgatttttcttaccgtatatttgatgaaataatggttgaaagagacgtcttcgctttcaaattgg |
20600479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 503
Target Start/End: Original strand, 19736927 - 19737038
Alignment:
| Q |
392 |
gtaattatgctcgtgtcttatttgatgttgatttttccctccgtatctttgatgaaataatggttgaaagagacggctttgcatttaaattgggagtagc |
491 |
Q |
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||||||||||||| | || ||||| |||||||||| | | |||| |||||| |||||||||||||||||||| ||| | |||||||||| ||| | |
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| T |
19736927 |
gtaattatgctcgcattttggttgatattgatttttctcgctgtatacttgatggaataatggttgaaagagacgacttcacttttaaattggaagtggt |
19737026 |
T |
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| Q |
492 |
ttatgaatggct |
503 |
Q |
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||| |||||||| |
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| T |
19737027 |
ttacgaatggct |
19737038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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