View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12954_low_7 (Length: 511)
Name: NF12954_low_7
Description: NF12954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12954_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 17 - 504
Target Start/End: Complemental strand, 40796145 - 40795658
Alignment:
| Q |
17 |
caaggtgtttagggcaaaataaaatttcattatagagttgattctctgtgacatcaaaacgagtgggttccctaaattatattaattggagaaatgtata |
116 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40796145 |
caaggtgtttagagcaaaataaaatttcattatagagttgattctatgtgacatcaaaacgattgggttccctaaattatattaattggagaaatgtata |
40796046 |
T |
|
| Q |
117 |
aattcaagagcttgtaaatttggtgactgctttggttccctcggagacagcgtgcttggcaagttcgccaggaagaacgagacgaacagcagtctgaatc |
216 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40796045 |
aattcaagagcttgtaaatttagtgactgctttggttccctcggagacagcgtgcttggcaagttcgccgggaagaacgagacgaacagcagtctgaatc |
40795946 |
T |
|
| Q |
217 |
tcacgagaggtgatggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
40795945 |
tcacgagaggtgatggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaagatgtcattgatgaaactgttcatgatcc |
40795846 |
T |
|
| Q |
317 |
ccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctcttttt |
416 |
Q |
| |
|
||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40795845 |
ccatagccttgctggagattccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctcttttt |
40795746 |
T |
|
| Q |
417 |
cttcttgtcggcagaggaagcttcctttgggatcttcttctccgctttggttttctctgcgggagctttttctgctggcttcatctca |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40795745 |
cttcttgtcggcagaggaagcttcctttgggatcttcttctccgctttggttttctctgcgggagctttttctgctggcttcttctca |
40795658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 91 - 503
Target Start/End: Complemental strand, 41670703 - 41670290
Alignment:
| Q |
91 |
aattatattaattggagaaatgtata-aattcaagagcttgtaaatttggtgactgctttggttccctcggagacagcgtgcttggcaagttcgccagga |
189 |
Q |
| |
|
|||||||| || | ||||||||||| |||||||||||| || |||||||| || || ||||||||||| |||||||| ||||| |||||||| || || |
|
|
| T |
41670703 |
aattatataaactagagaaatgtatcgaattcaagagctagtgaatttggtaacagccttggttccctcagagacagcatgcttagcaagttcaccgggg |
41670604 |
T |
|
| Q |
190 |
agaacgagacgaacagcagtctgaatctcacgagaggtgatggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaa |
289 |
Q |
| |
|
||||| ||||||||||||||||| ||||| ||||| ||||| ||||| ||||||||||| | || |||||||| ||||||||||||||||||||||| | |
|
|
| T |
41670603 |
agaacaagacgaacagcagtctgtatctcccgagaagtgattgtaggcttcttgttgtacctcgcaagtctggaagattcctgagcgagcttctcaaaga |
41670504 |
T |
|
| Q |
290 |
tgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggt |
389 |
Q |
| |
|
| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41670503 |
tatcattgatgaagctgttcatgatccccatagccttgcttgagataccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggt |
41670404 |
T |
|
| Q |
390 |
ttctacgctcttcttgtttctctttttcttcttgtcggcagaggaagcttcctttgggatcttcttctccgctttggttttctctgcgggagctttttct |
489 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||||| || || || ||| |
|
|
| T |
41670403 |
ttcaacgctcttcttgtttctcttcttcttcttgtcggtggaggatgcttcctttgggatcttcttttcggctttggttttctctgctggcgccttctct |
41670304 |
T |
|
| Q |
490 |
gctggcttcatctc |
503 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
41670303 |
gctggcttcttctc |
41670290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 117 - 404
Target Start/End: Complemental strand, 29391742 - 29391455
Alignment:
| Q |
117 |
aattcaagagcttgtaaatttggtgactgctttggttccctcggagacagcgtgcttggcaagttcgccaggaagaacgagacgaacagcagtctgaatc |
216 |
Q |
| |
|
||||||||| || ||||||||||| || || |||||||| ||||| ||||| || || || | ||| || |||||||| | ||| ||||| || |||||| |
|
|
| T |
29391742 |
aattcaagaactcgtaaatttggtaacagccttggttccttcggaaacagcatgtttcgccaattcaccgggaagaaccaaacgcacagccgtttgaatc |
29391643 |
T |
|
| Q |
217 |
tcacgagaggtgatggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattc |
316 |
Q |
| |
|
|| | || || || || |||||||||||||| ||||| | ||| || | |||||||||||| |||||||| || |||||||||||||||||||| || | |
|
|
| T |
29391642 |
tccctcgacgtaatcgtcggtttcttgttgtaacgagccaatctagaagcttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatcc |
29391543 |
T |
|
| Q |
317 |
ccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttctt |
404 |
Q |
| |
|
||||||| ||| || ||||| || |||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||| |
|
|
| T |
29391542 |
ccatagctttggaagaaatacctatatcaggatgaacctgtttgagaaccttgaagatgtaaatcttataggtttcaacgctcttctt |
29391455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 130 - 425
Target Start/End: Complemental strand, 23402337 - 23402042
Alignment:
| Q |
130 |
gtaaatttggtgactgctttggttccctcggagacagcgtgcttggcaagttcgccaggaagaacgagacgaacagcagtctgaatctcacgagaggtga |
229 |
Q |
| |
|
||||| ||||| || |||||||||||||| |||||||| |||||||| | ||| ||||||||||| || | || ||||||||||| || | || |||| |
|
|
| T |
23402337 |
gtaaacttggtcacagctttggttccctctgagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttcccttgaagtga |
23402238 |
T |
|
| Q |
230 |
tggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgct |
329 |
Q |
| |
|
| || || ||||||||||| ||||| |||||||||||||| ||||| |||||||| || || ||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
23402237 |
ttgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgct |
23402138 |
T |
|
| Q |
330 |
tgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttcttgtc |
425 |
Q |
| |
|
||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||| ||||||| ||||||||||| |
|
|
| T |
23402137 |
tgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttctacattcttcttacttctcttcttcttcttgtc |
23402042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 130 - 422
Target Start/End: Complemental strand, 23886090 - 23885798
Alignment:
| Q |
130 |
gtaaatttggtgactgctttggttccctcggagacagcgtgcttggcaagttcgccaggaagaacgagacgaacagcagtctgaatctcacgagaggtga |
229 |
Q |
| |
|
||||| ||||| || |||||||||||||| |||||||| |||||||| | ||| ||||||||||| || | || ||||||||||| || | || |||| |
|
|
| T |
23886090 |
gtaaacttggtcacagctttggttccctcagagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttcccttgaagtga |
23885991 |
T |
|
| Q |
230 |
tggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgct |
329 |
Q |
| |
|
| || || ||||||||||| ||||| |||||||||||||| ||||| |||||||| || || ||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
23885990 |
ttgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgct |
23885891 |
T |
|
| Q |
330 |
tgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt |
422 |
Q |
| |
|
||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||||| ||||| || |||||||| ||||||| |||||||| |
|
|
| T |
23885890 |
tgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaacattcttcttgcttctcttcttcttctt |
23885798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 122 - 422
Target Start/End: Original strand, 34662048 - 34662348
Alignment:
| Q |
122 |
aagagcttgtaaatttggtgactgctttggttccctcggagacagcgtgcttggcaagttcgccaggaagaacgagacgaacagcagtctgaatctcacg |
221 |
Q |
| |
|
|||| |||||||| || || || |||||||| ||||| || ||||| ||||| || | ||| ||||||||||| || | ||||||||||||||| || | |
|
|
| T |
34662048 |
aagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttccct |
34662147 |
T |
|
| Q |
222 |
agaggtgatggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccata |
321 |
Q |
| |
|
|| || || || || |||||||| || | || |||||||| ||||| |||||||||||||| || || |||||||||||||||||||| || ||||| |
|
|
| T |
34662148 |
cgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacccatg |
34662247 |
T |
|
| Q |
322 |
gccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttct |
421 |
Q |
| |
|
|| |||||||||||||| |||||||| ||||| || || |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
34662248 |
gctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttcaacgctcttcttgtttctcttcttcttct |
34662347 |
T |
|
| Q |
422 |
t |
422 |
Q |
| |
|
| |
|
|
| T |
34662348 |
t |
34662348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 122 - 419
Target Start/End: Original strand, 23415716 - 23416013
Alignment:
| Q |
122 |
aagagcttgtaaatttggtgactgctttggttccctcggagacagcgtgcttggcaagttcgccaggaagaacgagacgaacagcagtctgaatctcacg |
221 |
Q |
| |
|
||||||| ||||| || || || || ||||| ||||| || ||||| |||||||| | ||| ||||||||||| || | || ||||||||||| || | |
|
|
| T |
23415716 |
aagagctagtaaacttagtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttccct |
23415815 |
T |
|
| Q |
222 |
agaggtgatggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccata |
321 |
Q |
| |
|
|| ||||| || || ||||||||||| ||||| |||||||||||||| ||||| |||||||| || || ||||||||||||||||||||||| ||||| |
|
|
| T |
23415816 |
tgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatg |
23415915 |
T |
|
| Q |
322 |
gccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttctt |
419 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||||| ||||| || |||||||| ||||||| ||||| |
|
|
| T |
23415916 |
gccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaacattcttcttgcttctcttcttctt |
23416013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 130 - 422
Target Start/End: Original strand, 23453387 - 23453679
Alignment:
| Q |
130 |
gtaaatttggtgactgctttggttccctcggagacagcgtgcttggcaagttcgccaggaagaacgagacgaacagcagtctgaatctcacgagaggtga |
229 |
Q |
| |
|
||||| ||||| || || ||||| || || || ||||| |||||||| | ||| ||||||||||| |||| || ||||||||||| || | || |||| |
|
|
| T |
23453387 |
gtaaacttggtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagactgactgcagtctgaatttcccttgaagtga |
23453486 |
T |
|
| Q |
230 |
tggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgct |
329 |
Q |
| |
|
| || || ||||||||||| ||||| |||||||||||||| ||||| |||||||| || || ||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
23453487 |
ttgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgct |
23453586 |
T |
|
| Q |
330 |
tgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt |
422 |
Q |
| |
|
||||||||| ||||| || ||||| || || ||||| |||||||||||||||||||| |||||||| |||||||| ||||||| |||||||| |
|
|
| T |
23453587 |
tgagataccaatgtctgggtgaacatgattcagaactttgaagatgtagatcttgtatgtttctacattcttcttgcttctcttcttcttctt |
23453679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 145 - 425
Target Start/End: Complemental strand, 23868980 - 23868700
Alignment:
| Q |
145 |
gctttggttccctcggagacagcgtgcttggcaagttcgccaggaagaacgagacgaacagcagtctgaatctcacgagaggtgatggtaggtttcttgt |
244 |
Q |
| |
|
||||| ||||| || || ||||| || ||||| | ||| ||||||||||| || | |||||||||||||| || | || ||||| || || ||||||| |
|
|
| T |
23868980 |
gcttttgttccttcagaaacagcatgtttggccaattcaccaggaagaacaagtctgacagcagtctgaatttcccttgaagtgattgttggcttcttgt |
23868881 |
T |
|
| Q |
245 |
tgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtc |
344 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||| || ||||| || || |||||||||||||||||||| |||||||| || |||||||||||||| ||||| |
|
|
| T |
23868880 |
tgtaacgagcaagtctggatgattcttgagcaagtttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtc |
23868781 |
T |
|
| Q |
345 |
aggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttcttgtc |
425 |
Q |
| |
|
|| ||||||||||| ||||| |||||||||||||||||||| ||||| || |||||||| ||||||| ||||||||||| |
|
|
| T |
23868780 |
tgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaacattcttcttgcttctcttcttcttcttgtc |
23868700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 238 - 422
Target Start/End: Complemental strand, 26434179 - 26433995
Alignment:
| Q |
238 |
ttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagatac |
337 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| |||||||| ||||| || || ||||||||||||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
26434179 |
ttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagatac |
26434080 |
T |
|
| Q |
338 |
cgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt |
422 |
Q |
| |
|
| ||||| |||||||| || || |||||||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||| |
|
|
| T |
26434079 |
caatgtctggatgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttcttcttctt |
26433995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 136 - 422
Target Start/End: Complemental strand, 24307480 - 24307194
Alignment:
| Q |
136 |
ttggtgactgctttggttccctcggagacagcgtgcttggcaagttcgccaggaagaacgagacgaacagcagtctgaatctcacgagaggtgatggtag |
235 |
Q |
| |
|
||||| || |||||||| ||||| || ||||| |||||||| | ||| ||||||||||| || | |||||||||||||| || | || ||||| || | |
|
|
| T |
24307480 |
ttggtcacagctttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgacagcagtctgaatttcccttgaagtgattgttg |
24307381 |
T |
|
| Q |
236 |
gtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagat |
335 |
Q |
| |
|
| ||||||||||| ||||| |||||||||||||| ||||| || ||||| || || |||||||||||||||||||| |||||||| || ||||||||||| |
|
|
| T |
24307380 |
gcttcttgttgtaacgagcaagtctggatgattcttgagctagtttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagat |
24307281 |
T |
|
| Q |
336 |
accgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt |
422 |
Q |
| |
|
||| ||||| || ||||| || || |||||||||||||| ||||||||||| ||||| || |||||||| ||||||| |||||||| |
|
|
| T |
24307280 |
accaatgtctgggtgaacttgtttcagaaccttgaagatatagatcttgtatgtttcaacattcttcttgcttctcttcttcttctt |
24307194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 238 - 422
Target Start/End: Complemental strand, 26832890 - 26832706
Alignment:
| Q |
238 |
ttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagatac |
337 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| |||||||| ||||| || || ||||||||||||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
26832890 |
ttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagatac |
26832791 |
T |
|
| Q |
338 |
cgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt |
422 |
Q |
| |
|
| ||||| || ||||| || || |||||||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||| |
|
|
| T |
26832790 |
caatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttcttcttctt |
26832706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 122 - 425
Target Start/End: Original strand, 23408547 - 23408850
Alignment:
| Q |
122 |
aagagcttgtaaatttggtgactgctttggttccctcggagacagcgtgcttggcaagttcgccaggaagaacgagacgaacagcagtctgaatctcacg |
221 |
Q |
| |
|
||||||| ||||| || || || || ||||| || || || ||||| |||||||| | ||| ||||||||||| || | || || |||||||| || | |
|
|
| T |
23408547 |
aagagctagtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattctccaggaagaacaagtctgaccgcggtctgaatttccct |
23408646 |
T |
|
| Q |
222 |
agaggtgatggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccata |
321 |
Q |
| |
|
|| ||||| || || ||||||||||| ||||| |||||||||||||| ||||| |||||||| || || ||||||||||||||||||||||| ||||| |
|
|
| T |
23408647 |
tgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatc |
23408746 |
T |
|
| Q |
322 |
gccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttct |
421 |
Q |
| |
|
|| |||||||||||||| ||||| || ||||| || || ||||| |||||||||||||||||||| |||||||| ||||||| ||||||| ||||||| |
|
|
| T |
23408747 |
gctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaagatgtagatcttgtatgtttctacattcttcttacttctcttcttcttct |
23408846 |
T |
|
| Q |
422 |
tgtc |
425 |
Q |
| |
|
|||| |
|
|
| T |
23408847 |
tgtc |
23408850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 238 - 422
Target Start/End: Complemental strand, 26435959 - 26435775
Alignment:
| Q |
238 |
ttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagatac |
337 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||| |||| ||| ||||| || || ||||||||||||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
26435959 |
ttcttgttgtaacgagcaagtctggaagattcttgagtgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagatac |
26435860 |
T |
|
| Q |
338 |
cgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt |
422 |
Q |
| |
|
| ||||| || ||||| || || |||||||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||| |
|
|
| T |
26435859 |
caatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttcttcttctt |
26435775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 303
Target Start/End: Original strand, 23451855 - 23451920
Alignment:
| Q |
238 |
ttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaa |
303 |
Q |
| |
|
||||||||||||||||| |||||||| |||| ||||||||||||||||| || || ||||||||| |
|
|
| T |
23451855 |
ttcttgttgtagcgagcaagtctggagtattcttgagcgagcttctcaaagatatcgttgatgaaa |
23451920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 265 - 426
Target Start/End: Original strand, 40180420 - 40180581
Alignment:
| Q |
265 |
gattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaa |
364 |
Q |
| |
|
|||||||||||||| |||||||| || || || ||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||| || |||| |
|
|
| T |
40180420 |
gattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaa |
40180519 |
T |
|
| Q |
365 |
ccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttcttgtcg |
426 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| ||||| ||||||| |||||||||||| |
|
|
| T |
40180520 |
ccttgaagatgtatatcttgtaggtttcaacgcttttcttcgttctcttcttcttcttgtcg |
40180581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 271 - 417
Target Start/End: Complemental strand, 29684822 - 29684676
Alignment:
| Q |
271 |
tgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttga |
370 |
Q |
| |
|
|||||||| |||| ||| || || || | ||||||||| || | ||||||||| || ||||| | ||| ||| |||||||||| || ||||||||||||| |
|
|
| T |
29684822 |
tgagcgagtttcttaaagatatcgttcacgaaactgttaataactcccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaaccttga |
29684723 |
T |
|
| Q |
371 |
agatgtagatcttgtaggtttctacgctcttcttgtttctctttttc |
417 |
Q |
| |
|
| || || |||||||||||||| | ||| ||||| |||||||||| |
|
|
| T |
29684722 |
atatatatatcttgtaggtttcaatgcttttctttgatctctttttc |
29684676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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