View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12954_low_8 (Length: 509)

Name: NF12954_low_8
Description: NF12954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12954_low_8
NF12954_low_8
[»] scaffold0525 (1 HSPs)
scaffold0525 (297-467)||(2028-2198)
[»] chr5 (8 HSPs)
chr5 (297-468)||(21256588-21256759)
chr5 (297-467)||(21254116-21254286)
chr5 (297-467)||(26873161-26873331)
chr5 (297-436)||(31339169-31339309)
chr5 (385-466)||(4730659-4730741)
chr5 (320-380)||(15531475-15531535)
chr5 (320-378)||(15531586-15531644)
chr5 (405-467)||(43233901-43233963)
[»] chr4 (8 HSPs)
chr4 (297-468)||(2546988-2547159)
chr4 (387-467)||(35783779-35783859)
chr4 (387-467)||(5444778-5444859)
chr4 (297-375)||(20880131-20880209)
chr4 (405-468)||(27510482-27510545)
chr4 (391-467)||(5440887-5440964)
chr4 (297-370)||(20879962-20880035)
chr4 (387-467)||(4174728-4174808)
[»] scaffold0862 (1 HSPs)
scaffold0862 (297-467)||(190-360)
[»] chr8 (4 HSPs)
chr8 (297-467)||(7275144-7275314)
chr8 (297-467)||(7277749-7277919)
chr8 (298-467)||(13856639-13856809)
chr8 (319-460)||(3567495-3567639)
[»] chr7 (7 HSPs)
chr7 (297-467)||(41830168-41830338)
chr7 (297-467)||(41832574-41832744)
chr7 (296-468)||(8083388-8083560)
chr7 (184-274)||(35014479-35014569)
chr7 (310-468)||(25432047-25432206)
chr7 (387-440)||(23613779-23613832)
chr7 (405-467)||(7737387-7737449)
[»] chr1 (3 HSPs)
chr1 (296-467)||(18705708-18705879)
chr1 (297-370)||(12436186-12436259)
chr1 (296-380)||(50038528-50038613)
[»] chr2 (5 HSPs)
chr2 (297-467)||(31180186-31180355)
chr2 (297-467)||(31269463-31269632)
chr2 (296-467)||(24038230-24038401)
chr2 (297-467)||(24039426-24039596)
chr2 (319-468)||(36402683-36402832)
[»] scaffold0023 (1 HSPs)
scaffold0023 (297-467)||(111544-111714)
[»] chr6 (7 HSPs)
chr6 (297-467)||(8655827-8655991)
chr6 (297-467)||(30689634-30689804)
chr6 (378-467)||(6825508-6825597)
chr6 (378-467)||(6823035-6823124)
chr6 (387-467)||(24249778-24249858)
chr6 (387-460)||(1136235-1136309)
chr6 (390-467)||(4555733-4555810)
[»] scaffold0251 (1 HSPs)
scaffold0251 (297-433)||(4583-4719)
[»] chr3 (13 HSPs)
chr3 (297-467)||(10018777-10018948)
chr3 (297-467)||(10179974-10180145)
chr3 (297-467)||(10256091-10256262)
chr3 (333-467)||(10123317-10123452)
chr3 (387-467)||(782838-782918)
chr3 (194-292)||(4603466-4603563)
chr3 (296-467)||(19954451-19954623)
chr3 (305-374)||(8504296-8504365)
chr3 (414-467)||(10661756-10661809)
chr3 (414-467)||(10514351-10514404)
chr3 (353-467)||(10511027-10511141)
chr3 (414-468)||(10613345-10613399)
chr3 (297-411)||(10744728-10744843)
[»] scaffold0655 (1 HSPs)
scaffold0655 (297-466)||(612-782)
[»] scaffold0001 (2 HSPs)
scaffold0001 (378-468)||(144660-144750)
scaffold0001 (378-467)||(146720-146809)


Alignment Details
Target: scaffold0525 (Bit Score: 143; Significance: 7e-75; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 297 - 467
Target Start/End: Complemental strand, 2198 - 2028
Alignment:
Q  297 tattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagagggaacttttctgattttgtaatat 396  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2198 tattagagatatagattaatagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatat 2099  T
Q  397 tccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||    
T  2098 tccatttccatcaatagaaagagtttcttagttttctctccttccttccatggatgccatgtttcccaaca 2028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 4e-73; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 297 - 468
Target Start/End: Original strand, 21256588 - 21256759
Alignment:
Q  297 tattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagagggaacttttctgattttgtaatat 396  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21256588 tattagagatatagattagtagcatattagtcatagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatat 21256687  T
Q  397 tccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaacac 468  Q
    ||||||| ||||||| |||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  21256688 tccattttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaacac 21256759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 297 - 467
Target Start/End: Original strand, 21254116 - 21254286
Alignment:
Q  297 tattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagagggaacttttctgattttgtaatat 396  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  21254116 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccgccccattagagggaacttttctcattttgtaatat 21254215  T
Q  397 tccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    ||| ||| ||||||| |||||||||| ||| ||||||||||||| ||||||||||| ||||||||||||||    
T  21254216 tcctttttcatcaatagaaagagtttgttacttttctctccttccttccatggatgccatgtttcctaaca 21254286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 297 - 467
Target Start/End: Complemental strand, 26873331 - 26873161
Alignment:
Q  297 tattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagagggaacttttctgattttgtaatat 396  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||  |||||||||| ||||||||| |||| |||||||    
T  26873331 tattagagatatagattagtagcatattagtcctagtagagagtagtaaaaataacttgtaatcattccattagaggaaacttttctcatttcgtaatat 26873232  T
Q  397 tccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    || |||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  26873231 tctatttccatcaatagaaagagtttcttagttttctctccttccttccatggatgccatgtttcctaaca 26873161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 297 - 436
Target Start/End: Complemental strand, 31339309 - 31339169
Alignment:
Q  297 tattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagaggg-aacttttctgattttgtaata 395  Q
    |||||||||||| || || ||  |||||||||||| |||||||||||||||||||||||||||||||||||||| |||  | ||  || |||||||||||    
T  31339309 tattagagatattgaataatattatattagtcctagtagagagtagtataaataacttgtaaccaccccattagtgggtcaattcactcattttgtaata 31339210  T
Q  396 ttccatttccatcaattgaaagagtttcttagttttctctc 436  Q
    ||| ||||||||| || ||||||||||||||||||||||||    
T  31339209 ttcaatttccatcgatagaaagagtttcttagttttctctc 31339169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 385 - 466
Target Start/End: Original strand, 4730659 - 4730741
Alignment:
Q  385 attttgtaatattccatttccatcaattgaaagagtttcttag--ttttctctccttctttccatggatgtcatgtttcctaac 466  Q
    |||||||||||||||||||||||||||  ||||||||| ||||  |||| ||||||||  |||||||||| |||||||||||||    
T  4730659 attttgtaatattccatttccatcaatacaaagagtttgttagctttttttctccttc-atccatggatgccatgtttcctaac 4730741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 380
Target Start/End: Complemental strand, 15531535 - 15531475
Alignment:
Q  320 atattagtcctactagagagtagtataaataacttgtaaccaccccattagagggaacttt 380  Q
    |||||||||||| |||| |||| ||||||||  |||||||||||||||||| |||||||||    
T  15531535 atattagtcctaatagatagtactataaatagtttgtaaccaccccattagtgggaacttt 15531475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 378
Target Start/End: Complemental strand, 15531644 - 15531586
Alignment:
Q  320 atattagtcctactagagagtagtataaataacttgtaaccaccccattagagggaact 378  Q
    |||||||||||| |||| |||| |||||||| ||||||||||||| ||||| |||||||    
T  15531644 atattagtcctaatagatagtactataaatagcttgtaaccacccaattagtgggaact 15531586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 467
Target Start/End: Original strand, 43233901 - 43233963
Alignment:
Q  405 catcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    ||||||| |||||| | | | ||||||||||| ||| ||||||||||| ||||||||||||||    
T  43233901 catcaatagaaagattctttgagttttctctcattccttccatggatgccatgtttcctaaca 43233963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 4e-73; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 297 - 468
Target Start/End: Original strand, 2546988 - 2547159
Alignment:
Q  297 tattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagagggaacttttctgattttgtaatat 396  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2546988 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatat 2547087  T
Q  397 tccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaacac 468  Q
    |||||||| ||||||  ||||||||| |||| |||||||||||| |||||||||||||||||||||||||||    
T  2547088 tccatttctatcaatacaaagagtttgttagatttctctccttccttccatggatgtcatgtttcctaacac 2547159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 387 - 467
Target Start/End: Original strand, 35783779 - 35783859
Alignment:
Q  387 tttgtaatattccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    |||||||||||||||||| ||||||  ||||||||| ||||||||  ||||||||||||||||||| |||||||| |||||    
T  35783779 tttgtaatattccatttcaatcaatacaaagagtttgttagtttttcctccttctttccatggatgccatgtttcttaaca 35783859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 387 - 467
Target Start/End: Original strand, 5444778 - 5444859
Alignment:
Q  387 tttgtaatattccatttccatcaattgaaagagtttcttag-ttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    |||||||||||||||||| ||||||  ||||||||| |||| ||||| |||||||||||||| |||| ||||||||||||||    
T  5444778 tttgtaatattccatttcaatcaatacaaagagtttgttagtttttccctccttctttccatagatgccatgtttcctaaca 5444859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 297 - 375
Target Start/End: Complemental strand, 20880209 - 20880131
Alignment:
Q  297 tattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagaggga 375  Q
    |||||||||| ||||||| ||    |||||| ||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  20880209 tattagagatgtagattaataattcattagttctagtagacagtagtataaataacttgtaaccaccccattagtggga 20880131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 468
Target Start/End: Complemental strand, 27510545 - 27510482
Alignment:
Q  405 catcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaacac 468  Q
    ||||||| |||||| | ||||||||||||||| ||| |||  ||||| ||||||||||||||||    
T  27510545 catcaatagaaagattctcttagttttctctcattccttcattggatatcatgtttcctaacac 27510482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 467
Target Start/End: Original strand, 5440887 - 5440964
Alignment:
Q  391 taatattccatttccatcaattgaaagagtttcttagttttct-ctccttctttccatggatgtcatgtttcctaaca 467  Q
    ||||||| |||||| ||||||  ||||||||| |||||||| | ||||||||||  || |||| ||||||||||||||    
T  5440887 taatatttcatttcaatcaatacaaagagtttgttagtttttttctccttctttttatagatgccatgtttcctaaca 5440964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 370
Target Start/End: Original strand, 20879962 - 20880035
Alignment:
Q  297 tattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattag 370  Q
    ||||||| |||||||||||| | | |||||  ||| |||| | ||||||||||||||| |||||||| ||||||    
T  20879962 tattagaaatatagattagtggtacattagctctagtagacattagtataaataacttataaccacctcattag 20880035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 467
Target Start/End: Complemental strand, 4174808 - 4174728
Alignment:
Q  387 tttgtaatattccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    |||||||||||| |||| ||| |||  ||||||||||| | ||||||||| ||||||  ||| |||| ||||||| |||||    
T  4174808 tttgtaatattctattttcattaatacaaagagtttctaacttttctctcattctttatatgaatgtaatgtttcataaca 4174728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862 (Bit Score: 139; Significance: 2e-72; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 297 - 467
Target Start/End: Original strand, 190 - 360
Alignment:
Q  297 tattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagagggaacttttctgattttgtaatat 396  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  190 tattagagatatagattagtagcatattagtcctagtagagaatagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatat 289  T
Q  397 tccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    ||||||| ||||||| |||||||||||||||||||||||||||| || |||||||| ||||||||||||||    
T  290 tccattttcatcaatagaaagagtttcttagttttctctccttcctttcatggatgccatgtttcctaaca 360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 2e-72; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 297 - 467
Target Start/End: Complemental strand, 7275314 - 7275144
Alignment:
Q  297 tattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagagggaacttttctgattttgtaatat 396  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  7275314 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggtacttttctcattttgtaatat 7275215  T
Q  397 tccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  7275214 tccattttcatcaatagaaagagtttcttagttttctctccttcttttcatggataccatgtttcctaaca 7275144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 297 - 467
Target Start/End: Complemental strand, 7277919 - 7277749
Alignment:
Q  297 tattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagagggaacttttctgattttgtaatat 396  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  7277919 tattagagatatagattattagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggtacttttctcattttgtaatat 7277820  T
Q  397 tccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  7277819 tccattttcatcaatagaaagagtttcttagttttctctccttctttccatggataccatgtttcctaaca 7277749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 298 - 467
Target Start/End: Original strand, 13856639 - 13856809
Alignment:
Q  298 attagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagaggg-aacttt-tctgattttgtaata 395  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||  || | |||||| ||    
T  13856639 attagagatatagattagtggcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggttactttcactca-tttgtagta 13856737  T
Q  396 ttccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    ||||||||| ||||||  |||| |||  |||||||||||||||||||||||||||||||||||||| |||||    
T  13856738 ttccatttctatcaatacaaagtgttcgttagttttctctccttctttccatggatgtcatgtttcataaca 13856809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 319 - 460
Target Start/End: Complemental strand, 3567639 - 3567495
Alignment:
Q  319 catattagtcctactagagagtagtataaataacttgtaaccaccccattagaggga-actttt---ctgattttgtaatattccatttccatcaattga 414  Q
    |||||||||||||  ||||||||||||||||||| ||||||||||| |||||||||| ||||||   || |||| |||||||||||||| |||||||  |    
T  3567639 catattagtcctagcagagagtagtataaataacctgtaaccaccctattagagggatactttttcactcattt-gtaatattccattttcatcaataca 3567541  T
Q  415 aagagtttcttagttttctctccttctttccatggatgtcatgttt 460  Q
    |||||||| |||| ||||| |||||| ||||| |||||||||||||    
T  3567540 aagagtttgttagatttctttccttccttccacggatgtcatgttt 3567495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 139; Significance: 2e-72; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 297 - 467
Target Start/End: Original strand, 41830168 - 41830338
Alignment:
Q  297 tattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagagggaacttttctgattttgtaatat 396  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41830168 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatat 41830267  T
Q  397 tccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    || |||| ||||||| |||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||    
T  41830268 tcaatttacatcaatagaaagagtttcttagttttctctcattccttccatggatgacatgtttcctaaca 41830338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 297 - 467
Target Start/End: Original strand, 41832574 - 41832744
Alignment:
Q  297 tattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagagggaacttttctgattttgtaatat 396  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  41832574 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggtacttttctcattttgtaatat 41832673  T
Q  397 tccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    || |||| ||||||| |||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||    
T  41832674 tcaattttcatcaatagaaagagtttcttagttttctctcattccttccatggatgccatgtttcctaaca 41832744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 296 - 468
Target Start/End: Complemental strand, 8083560 - 8083388
Alignment:
Q  296 ttattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagagggaacttttctgattttgtaata 395  Q
    |||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  8083560 ttattaaagatatagattagtagcatattagtcctagtaaagagtagtataaataacttctaaccaccccattagagggaacttttgtcattttgtaata 8083461  T
Q  396 ttccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaacac 468  Q
    || ||||| ||||||| |||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  8083460 tttcattttcatcaatagaaagagttttttagttttctctccttccttccatggatgccatgtttcctaacac 8083388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 184 - 274
Target Start/End: Original strand, 35014479 - 35014569
Alignment:
Q  184 caaattcttctgatcctccattccatagacaagaggattccaatacatgtctgaatgtgacaaatagttgttgcagtacacaccactaaca 274  Q
    |||||| ||||||| |||| ||||| |||||||||||||| ||||||||  |||||  ||||||||||||||||| |||||||||||||||    
T  35014479 caaatttttctgatgctcccttccacagacaagaggattcaaatacatggttgaattggacaaatagttgttgcaatacacaccactaaca 35014569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 468
Target Start/End: Original strand, 25432047 - 25432206
Alignment:
Q  310 gattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagagggaacttt-tctgattttgtaatattccatttccatc 408  Q
    ||||||| | |||||||||||| |||| |||| |||||||| ||||||||||||||||||| ||| |||||  || | || ||||||||| |||||||||    
T  25432047 gattagtggtatattagtcctaatagatagtactataaatagcttgtaaccaccccattagtgggcactttcactca-ttcgtaatattcaatttccatc 25432145  T
Q  409 aattgaaag-agtttcttagttttctctccttctttccatggatgtcatgtttcctaacac 468  Q
    |||  |||| | |||  ||  |||||||| ||| ||||||||||| |||||||| ||||||    
T  25432146 aatataaagaactttgctacatttctctcattccttccatggatgccatgtttcataacac 25432206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 440
Target Start/End: Original strand, 23613779 - 23613832
Alignment:
Q  387 tttgtaatattccatttccatcaattgaaagagtttcttagttttctctccttc 440  Q
    ||||||||||| |||||||||||||  ||||||||| |||||||||||| ||||    
T  23613779 tttgtaatatttcatttccatcaataaaaagagtttgttagttttctctacttc 23613832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 467
Target Start/End: Original strand, 7737387 - 7737449
Alignment:
Q  405 catcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    ||||||| |||||| | ||||||||||||||| ||| |||  ||||| |||||||||||||||    
T  7737387 catcaatagaaagattctcttagttttctctcattccttcattggatatcatgtttcctaaca 7737449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 296 - 467
Target Start/End: Complemental strand, 18705879 - 18705708
Alignment:
Q  296 ttattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagagggaacttttctgattttgtaata 395  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18705879 ttattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaata 18705780  T
Q  396 ttccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    ||| |||| ||||||| |||||||||||||||||||||||||||| || |||||||| ||||||| ||||||    
T  18705779 ttctattttcatcaatagaaagagtttcttagttttctctccttcctttcatggatgccatgttttctaaca 18705708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 370
Target Start/End: Original strand, 12436186 - 12436259
Alignment:
Q  297 tattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattag 370  Q
    |||| ||||||||||||||| |||||||||| ||| || | ||||||||||||| || ||||||||||||||||    
T  12436186 tattggagatatagattagtggcatattagttctagtaaatagtagtataaatagctagtaaccaccccattag 12436259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 380
Target Start/End: Original strand, 50038528 - 50038613
Alignment:
Q  296 ttattagagatata-gattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagagggaacttt 380  Q
    |||||||||||||| ||||||| | |||||||||||| |||| ||||  | ||||| |||||||| |||||||||| |||||||||    
T  50038528 ttattagagatataagattagtggtatattagtcctaatagatagtaccaaaaatagcttgtaactaccccattagtgggaacttt 50038613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 4e-70; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 297 - 467
Target Start/End: Original strand, 31180186 - 31180355
Alignment:
Q  297 tattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagagggaacttttctgattttgtaatat 396  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||    
T  31180186 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttctaaccaccccattagaggga-cttttctcattttgtaatat 31180284  T
Q  397 tccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||| |||||||||    
T  31180285 tccatttccatcaatagaaagagtttcttagttttctctccttccttccatggatgccatgcttcctaaca 31180355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 297 - 467
Target Start/End: Complemental strand, 31269632 - 31269463
Alignment:
Q  297 tattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagagggaacttttctgattttgtaatat 396  Q
    ||||||| |||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  31269632 tattagatatatagat-agtagcatattagtcctagtagagagtaatataaataacttgtaaccaccccattagagggtacttttctcattttgtaatat 31269534  T
Q  397 tccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    || |||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  31269533 tcaatttccatcaatagaaagagtttcttagttttctctccttccttccatggatgccatgtttcctaaca 31269463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 296 - 467
Target Start/End: Original strand, 24038230 - 24038401
Alignment:
Q  296 ttattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagagggaacttttctgattttgtaata 395  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||||||    
T  24038230 ttattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccactccattagagggcacttttctcatattgtaata 24038329  T
Q  396 ttccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    |||||||| ||||||| |||| ||||||||||||||||||| ||| ||||||||||| ||||||| ||||||    
T  24038330 ttccattttcatcaatagaaaaagtttcttagttttctctcattccttccatggatgccatgttttctaaca 24038401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 297 - 467
Target Start/End: Original strand, 24039426 - 24039596
Alignment:
Q  297 tattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagagggaacttttctgattttgtaatat 396  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||| || |||||||||    
T  24039426 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccacctcattagagggcacttttctcatattgtaatat 24039525  T
Q  397 tccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    ||||||| ||||||| |||| ||||||||||||||||||| ||| ||||||||||| ||||||| ||||||    
T  24039526 tccattttcatcaatagaaaaagtttcttagttttctctcattccttccatggatgccatgttttctaaca 24039596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 468
Target Start/End: Complemental strand, 36402832 - 36402683
Alignment:
Q  319 catattagtcctactagagagtagtataaataacttgtaaccaccccattagaggg-aacttt-tctgattttgtaatattccatttccatcaattgaaa 416  Q
    |||||||||| || ||||   |||||||||||  |||||||||||||||||| ||| ||||||  || | |||||||||||| ||||||||||||  |||    
T  36402832 catattagtcttagtagattttagtataaatagtttgtaaccaccccattagtgggtaactttcactca-tttgtaatattctatttccatcaatacaaa 36402734  T
Q  417 gagtttcttagttttctctccttctttccatggatgtcatgtttcctaacac 468  Q
    ||||||  ||| |||||||||||| |||||||||| ||||||||| ||||||    
T  36402733 gagttt-gtagatttctctccttcattccatggatatcatgtttcataacac 36402683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 297 - 467
Target Start/End: Complemental strand, 111714 - 111544
Alignment:
Q  297 tattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagagggaacttttctgattttgtaatat 396  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  111714 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatat 111615  T
Q  397 tccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    |||||||  ||||||  ||||||||| |||  |||||||||||| ||||||||||| ||||||||||||||    
T  111614 tccatttaaatcaataaaaagagtttattaaatttctctccttccttccatggatgccatgtttcctaaca 111544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 297 - 467
Target Start/End: Complemental strand, 8655991 - 8655827
Alignment:
Q  297 tattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagagggaacttttctgattttgtaatat 396  Q
    |||||||||||||||||| ||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8655991 tattagagatatagattaatagcatattagt------agagagtagtataaataacttgtaaccaccccattagagggaacttttctcattttgtaatat 8655898  T
Q  397 tccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  8655897 tccatttccatcaatagaaagagtttcttagttttctctccttccttctatggatgccatgtttcctaaca 8655827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 297 - 467
Target Start/End: Complemental strand, 30689804 - 30689634
Alignment:
Q  297 tattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagagggaacttttctgattttgtaatat 396  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||    
T  30689804 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctcattttgtaatat 30689705  T
Q  397 tccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    | || || ||||||| |||||||||||||||||||||||| ||| || |||||||| ||||||||||||||    
T  30689704 ttcactttcatcaatagaaagagtttcttagttttctctcattcctttcatggatgccatgtttcctaaca 30689634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 378 - 467
Target Start/End: Complemental strand, 6825597 - 6825508
Alignment:
Q  378 ttttctgattttgtaatattccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    |||||| |||||||||||||||||||| ||||||  ||||||||| |||| ||| |||||||| ||||||||||| ||||||||||||||    
T  6825597 ttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttatctccttccttccatggatgccatgtttcctaaca 6825508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 378 - 467
Target Start/End: Complemental strand, 6823124 - 6823035
Alignment:
Q  378 ttttctgattttgtaatattccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    |||||| |||||||||||||||||||| ||||||  ||||||||| |||| ||| |||||||| ||||||| ||||||||||| ||||||    
T  6823124 ttttctcattttgtaatattccatttctatcaatacaaagagtttgttagatttatctccttccttccatgaatgtcatgttttctaaca 6823035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 387 - 467
Target Start/End: Original strand, 24249778 - 24249858
Alignment:
Q  387 tttgtaatattccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    ||||||||||||||||||||| |||  ||||||||| ||||||||||||| |||||| ||| |||| ||||||||||||||    
T  24249778 tttgtaatattccatttccattaatacaaagagtttgttagttttctctcattctttacattgatgccatgtttcctaaca 24249858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 460
Target Start/End: Complemental strand, 1136309 - 1136235
Alignment:
Q  387 tttgtaatattccatttccatcaattgaaagag-tttcttagttttctctccttctttccatggatgtcatgttt 460  Q
    |||||||||||| ||||||||||||  |||||| |||  ||  |||||||| ||| |||||||||||||||||||    
T  1136309 tttgtaatattcaatttccatcaatataaagagatttgctatatttctctcattccttccatggatgtcatgttt 1136235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 467
Target Start/End: Original strand, 4555733 - 4555810
Alignment:
Q  390 gtaatattccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    |||||||| |||||| ||||||  ||||||||| |||| |||  |||||||  || ||||||| ||||||||||||||    
T  4555733 gtaatatttcatttctatcaatacaaagagtttgttagattttgctccttcgatctatggatgccatgtttcctaaca 4555810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 297 - 433
Target Start/End: Original strand, 4583 - 4719
Alignment:
Q  297 tattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagagggaacttttctgattttgtaatat 396  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||   ||||||||||||    
T  4583 tattagatatatagattagtagcatattagtcctagtagagagtagtataaataatttgtaaccaccctattagagggaactttttccattttgtaatat 4682  T
Q  397 tccatttccatcaattgaaagagtttcttagttttct 433  Q
    | ||||| ||||||| |||||||||||||||||||||    
T  4683 ttcattttcatcaatagaaagagtttcttagttttct 4719  T

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Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 297 - 467
Target Start/End: Complemental strand, 10018948 - 10018777
Alignment:
Q  297 tattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagaggga-actttt-ctgattttgtaat 394  Q
    |||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||| ||||  |||||| ||  ||||   || |||| |||||    
T  10018948 tattagagatatagattagtggcatattagttctagtagagagtagtataaataacttgtaatcaccttattagatggttacttccactcattt-gtaat 10018850  T
Q  395 attccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    ||| |||||||||||||  ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  10018849 atttcatttccatcaatacaaagagtttgttagttttctctccttctttccatggatgccatgtttcctaaca 10018777  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 297 - 467
Target Start/End: Complemental strand, 10180145 - 10179974
Alignment:
Q  297 tattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagaggga-actttt-ctgattttgtaat 394  Q
    |||||||||||||||||||| ||||||||||  || ||||||||| |||||||||||||||| || || |||||||||  |||||  || |||| |||||    
T  10180145 tattagagatatagattagtggcatattagttgtagtagagagtaatataaataacttgtaatcatcctattagagggttactttcactcattt-gtaat 10180047  T
Q  395 attccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    ||| |||||||||||||  ||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  10180046 atttcatttccatcaatacaaagagtttgttagttttctctccttcttttcatggatgtcatgtttcctaaca 10179974  T

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Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 297 - 467
Target Start/End: Complemental strand, 10256262 - 10256091
Alignment:
Q  297 tattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagaggga-actttt-ctgattttgtaat 394  Q
    |||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||  |||||| ||  ||||   || |||| |||||    
T  10256262 tattagagatatagattagtggcatattagttctagtagagagtagtataaataacttgtaaccaccttattagatggttacttccactcattt-gtaat 10256164  T
Q  395 attccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    ||| |||||||||||||  ||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  10256163 atttcatttccatcaatacaaaaagtttgttagttttctctccttctttccatggatgccatgtttcctaaca 10256091  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 333 - 467
Target Start/End: Complemental strand, 10123452 - 10123317
Alignment:
Q  333 tagagagtagtataaataacttgtaaccaccccattagaggga-actttt-ctgattttgtaatattccatttccatcaattgaaagagtttcttagttt 430  Q
    |||| ||||||||||||||||||||||||||  |||||||||  ||||   || |||| |||||||| |||||||||||||  ||||||||| |||||||    
T  10123452 tagaaagtagtataaataacttgtaaccaccttattagagggttacttccactcattt-gtaatatttcatttccatcaatacaaagagtttgttagttt 10123354  T
Q  431 tctctccttctttccatggatgtcatgtttcctaaca 467  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  10123353 tctctccttcttttcatggatgccatgtttcctaaca 10123317  T

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Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 387 - 467
Target Start/End: Complemental strand, 782918 - 782838
Alignment:
Q  387 tttgtaatattccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    |||||||||||||||||| ||||||  ||||||||| |||| |||||||||||| ||||||||||||||||||||||||||    
T  782918 tttgtaatattccatttctatcaatacaaagagtttgttagatttctctccttccttccatggatgtcatgtttcctaaca 782838  T

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Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 194 - 292
Target Start/End: Complemental strand, 4603563 - 4603466
Alignment:
Q  194 tgatcctccattccatagacaagaggattccaatacatgtctgaatgtgacaaatagttgttgcagtacacaccactaacatggaggaaataagaactc 292  Q
    ||||||||||||||||||| ||||||| ||||||||||| ||||| ||||||||||||||||||| | |||||||||||||  |||||| || ||||||    
T  4603563 tgatcctccattccatagataagaggagtccaatacatggctgaaagtgacaaatagttgttgcaat-cacaccactaacagagaggaattaggaactc 4603466  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 467
Target Start/End: Complemental strand, 19954623 - 19954451
Alignment:
Q  296 ttattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagaggg-aacttt-tctgattttgtaa 393  Q
    ||||| ||||||||| |||||  |||| ||||| |  ||||  ||||||||||||  ||||||| ||| |||||| ||| ||||||  || | ||||||     
T  19954623 ttattggagatatagtttagtttcataatagtctttgtagattgtagtataaatagtttgtaacaacctcattagtgggtaactttcactca-tttgtat 19954525  T
Q  394 tattccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    ||||||||||||||||||  |||||| || |||| |||||||||||| |||||||||||||||||||| |||||    
T  19954524 tattccatttccatcaatacaaagagattgttagatttctctccttccttccatggatgtcatgtttcataaca 19954451  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 305 - 374
Target Start/End: Complemental strand, 8504365 - 8504296
Alignment:
Q  305 atatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagaggg 374  Q
    |||||||||||| |||||||||||||| || |||||||||||||||||||||||| |||  |||||||||    
T  8504365 atatagattagtggcatattagtcctagtaaagagtagtataaataacttgtaacaaccaaattagaggg 8504296  T

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Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 414 - 467
Target Start/End: Complemental strand, 10661809 - 10661756
Alignment:
Q  414 aaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  10661809 aaagagtttgttagttttctctcattctttccatggatgtcatgtttcctaaca 10661756  T

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Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 414 - 467
Target Start/End: Complemental strand, 10514404 - 10514351
Alignment:
Q  414 aaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    ||||||||| ||||||||||||||||||||||||||||| |||| |||||||||    
T  10514404 aaagagtttattagttttctctccttctttccatggatgccatgattcctaaca 10514351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 353 - 467
Target Start/End: Complemental strand, 10511141 - 10511027
Alignment:
Q  353 ttgtaaccaccccattagaggga-acttttctgattttgtaatattccattt-ccatcaattgaaagagtttcttagttttctctccttctttccatgga 450  Q
    |||||||||||||||||| |||| ||||| |    ||||||||||||||||| |||| |||  ||||||||| ||||||||||||| |||||||||| ||    
T  10511141 ttgtaaccaccccattagtgggatactttccctcatttgtaatattccattttccat-aatacaaagagtttgttagttttctctcattctttccataga 10511043  T
Q  451 tgtcatgtttcctaaca 467  Q
    || ||||||||||||||    
T  10511042 tg-catgtttcctaaca 10511027  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 10613399 - 10613345
Alignment:
Q  414 aaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaacac 468  Q
    ||||||||| ||||||||||||| ||||||| |||||||||||| |||| |||||    
T  10613399 aaagagtttgttagttttctctcattctttctatggatgtcatgattcccaacac 10613345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 411
Target Start/End: Original strand, 10744728 - 10744843
Alignment:
Q  297 tattagagatata-gattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagagggaacttttctgattttgtaata 395  Q
    ||||||||||||| ||||||| | ||||||||| || || | ||||||||||||| |||| ||||||| |||||| ||| | |||    | ||| |||||    
T  10744728 tattagagatatatgattagtggtatattagtcttaatatatagtagtataaatagcttgaaaccacctcattagtgggcaatttcactaatttataata 10744827  T
Q  396 ttccatttccatcaat 411  Q
    ||| ||||||||||||    
T  10744828 ttcaatttccatcaat 10744843  T

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Target: scaffold0655 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 297 - 466
Target Start/End: Original strand, 612 - 782
Alignment:
Q  297 tattagagatatagattagtagcatattagtcctactagagagtagtataaataacttgtaaccaccccattagaggg-aacttttctgattttgtaata 395  Q
    ||||||||||||||||||||  ||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||  ||||  || ||||| |||||    
T  612 tattagagatatagattagtgccatattaatcctagtagagagtagtataaataacttgtatccaccccattagagggtgacttcactcatttt-taata 710  T
Q  396 ttccatttccatcaattgaaagag-tttcttagttttctctccttctttccatggatgtcatgtttcctaac 466  Q
    ||| ||||||||||||  |||||| |||  || ||||||||| ||| ||| | ||||| |||||||||||||    
T  711 ttcaatttccatcaatacaaagagctttactacttttctctcattccttcgacggatgccatgtttcctaac 782  T

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Target: scaffold0001 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 378 - 468
Target Start/End: Complemental strand, 144750 - 144660
Alignment:
Q  378 ttttctgattttgtaatattccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaacac 468  Q
    |||||| |||||||||||||||||||| ||||||  ||||||||| |||| ||| |||||||| |||||| |||| |||||||||||||||    
T  144750 ttttctcattttgtaatattccatttctatcaatataaagagtttgttagatttatctccttccttccatagatgccatgtttcctaacac 144660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 378 - 467
Target Start/End: Complemental strand, 146809 - 146720
Alignment:
Q  378 ttttctgattttgtaatattccatttccatcaattgaaagagtttcttagttttctctccttctttccatggatgtcatgtttcctaaca 467  Q
    |||||| |||||||||||||||||||| ||||||  ||||||||| |||| ||| |||||||| ||| || |||| ||||||||||||||    
T  146809 ttttctcattttgtaatattccatttctatcaatataaagagtttgttagatttatctccttccttctatagatgccatgtttcctaaca 146720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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