View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12954_low_9 (Length: 422)
Name: NF12954_low_9
Description: NF12954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12954_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Original strand, 4495321 - 4495715
Alignment:
| Q |
18 |
aattcttcagctgaaaaaccaataagaagcaagatactgttcagtgtaagtgcttaaatgaaaacaaaataaatatgttttttgatcagaaagtgttgga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4495321 |
aattcttcagctgaaaaaccaataagaagcaagatactgttcagtgtaagtgcttaaatgaaaacaaaataaatatgttttttgatcagaaagtgttgga |
4495420 |
T |
|
| Q |
118 |
aatcacatgatcaaagagagaaggattcatctcatnnnnnnnnnnnnnnnntagcttgagagcttcagacagaaatattctatttataaagctacaagag |
217 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4495421 |
aatcacatgatcaaagagagaaggattcatctcataaaaaaataaaaaaaagagcttgagagcttcagacagaaatattctacttataaagctacaagag |
4495520 |
T |
|
| Q |
218 |
aatcaacaaactaactactactaacaaattctaaccaacttttctaactatcttttacatttatattaaaaagtacttaccagttgaagctgcatgtaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4495521 |
aatcaacaaactaactactactaaaaaattctaaccaacttttctaactatcttttacatttatattaaaaagtactgaccagttgaagctgcatgtaaa |
4495620 |
T |
|
| Q |
318 |
gggtttctaccagagtcacggaagagtaggattatgttatgattgtgggaataattattgaaactttgagctgcaatttgcattgctgttctctg |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4495621 |
gggtttctaccagagtcacggaagagtaggattatgttatgattgtgggaataattattgaaactttgagctgcaatttgcattgctgttctctg |
4495715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 18 - 412
Target Start/End: Original strand, 4500889 - 4501266
Alignment:
| Q |
18 |
aattcttcagctgaaaaaccaataagaagcaagatactgttcagtgtaagtgcttaaatgaaaacaaaataaatatgttttttgatcagaaagtgttgga |
117 |
Q |
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|||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
4500889 |
aattcttcagctgaaaaaccaaaaagaagcaagatattattcagtgtaagtgcttaaatgaaaacaaaataaagatgttttttgatcagaaagtgttaaa |
4500988 |
T |
|
| Q |
118 |
aatcacatgatcaaagagagaaggattcatctcatnnnnnnnnnnnnnnnntagcttgagagctt--cagacagaaatattctatttataaagctacaag |
215 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| || |||||||||| |||| ||||||||||||| ||||||||||||| |
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| T |
4500989 |
aatcacatgatcaaagagataaggattcatctcataagagaaata-------agtttgagagcttcacagagagaaatattctatatataaagctacaat |
4501081 |
T |
|
| Q |
216 |
agaatcaac-aaactaactactactaacaaattctaaccaacttttctaactatcttttacatttatattaaaaagtacttaccagttgaagctgcatgt |
314 |
Q |
| |
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||||||||| ||||||||||||||| ||||| ||||||||| ||||||||| | ||||| ||||| ||||||||||||||||| ||| |
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| T |
4501082 |
agaatcaacaaaactaactactacttacaaa-------------ttctaactaacttttacatgtttattagaaagttcttaccagttgaagctgattgt |
4501168 |
T |
|
| Q |
315 |
aaagggtttctaccagagtcacggaagagtaggattatgttatgattgtgggaataattattgaaactttgagctgcaatttgcattgctgttctctg |
412 |
Q |
| |
|
||||||||||||||||| |||| |||||||||| ||||| | ||| | | |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4501169 |
aaagggtttctaccagaatcacagaagagtagggttatggtttgagtattggaataattattgaaactttgagctgcaatttgcatggctgttctctg |
4501266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 285 - 412
Target Start/End: Original strand, 4508372 - 4508499
Alignment:
| Q |
285 |
aaaaagtacttaccagttgaagctgcatgtaaagggtttctaccagagtcacggaagagtaggattatgttatgattgtgggaataattattgaaacttt |
384 |
Q |
| |
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|||||||||| ||||| ||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
4508372 |
aaaaagtactcaccagctgaagctgcttgtaaagggtttttaccagagtcacggaagaaaaggattatgttatgattgttggaataattattgaaacttt |
4508471 |
T |
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| Q |
385 |
gagctgcaatttgcattgctgttctctg |
412 |
Q |
| |
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|||||||||||||||| |||||| |||| |
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| T |
4508472 |
gagctgcaatttgcatagctgttttctg |
4508499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 37165878 - 37165824
Alignment:
| Q |
196 |
tctatttataaagctacaagagaatcaacaaactaactactactaacaaattcta |
250 |
Q |
| |
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||||||||| |||||| ||||||||||||||||||||| |||||||||| |||| |
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| T |
37165878 |
tctatttatcaagctagtagagaatcaacaaactaactattactaacaaaatcta |
37165824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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