View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12955_low_2 (Length: 407)

Name: NF12955_low_2
Description: NF12955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12955_low_2
NF12955_low_2
[»] chr3 (6 HSPs)
chr3 (274-391)||(241605-241722)
chr3 (34-98)||(241980-242045)
chr3 (164-206)||(241790-241832)
chr3 (15-70)||(52895431-52895486)
chr3 (27-60)||(21720916-21720949)
chr3 (12-60)||(43079989-43080037)
[»] chr8 (5 HSPs)
chr8 (274-391)||(10520504-10520621)
chr8 (13-60)||(9130943-9130990)
chr8 (13-69)||(34286619-34286675)
chr8 (13-60)||(13265467-13265514)
chr8 (13-57)||(32213078-32213122)
[»] chr6 (2 HSPs)
chr6 (13-60)||(2034285-2034332)
chr6 (13-70)||(10874097-10874154)
[»] chr4 (11 HSPs)
chr4 (13-60)||(28663411-28663458)
chr4 (15-60)||(36740887-36740932)
chr4 (13-60)||(488440-488487)
chr4 (13-60)||(7148755-7148802)
chr4 (13-56)||(52274176-52274219)
chr4 (30-60)||(3564189-3564219)
chr4 (25-70)||(825655-825700)
chr4 (13-46)||(896967-897000)
chr4 (13-70)||(10046345-10046402)
chr4 (28-57)||(48667710-48667739)
chr4 (13-57)||(39932810-39932854)
[»] chr2 (3 HSPs)
chr2 (13-60)||(9140656-9140703)
chr2 (25-62)||(18276912-18276949)
chr2 (13-60)||(37419900-37419947)
[»] chr7 (3 HSPs)
chr7 (13-60)||(47511026-47511073)
chr7 (13-57)||(33288155-33288199)
chr7 (30-66)||(38372521-38372557)
[»] chr1 (3 HSPs)
chr1 (25-60)||(45267448-45267483)
chr1 (13-57)||(28870210-28870254)
chr1 (16-60)||(36178519-36178563)
[»] chr5 (3 HSPs)
chr5 (16-60)||(28625463-28625507)
chr5 (15-47)||(35083241-35083273)
chr5 (16-60)||(42706779-42706823)


Alignment Details
Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 274 - 391
Target Start/End: Complemental strand, 241722 - 241605
Alignment:
Q  274 ccaccagcaataccttcattaagcctaatagattccggaatctcatcataagccttcaatagcctcgcctcatccggcatatatttcaatatcacatcag 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  241722 ccaccagcaataccttcattaagcctaatagattccggaatctcatcataagccttcaatagcctcgcctcatccggcatatatttcaatatcacatcag 241623  T
Q  374 ccttatcatcctgataat 391  Q
    ||||||||||||||||||    
T  241622 ccttatcatcctgataat 241605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 242045 - 241980
Alignment:
Q  34 cataagctcaaaaacaagtcaatccaagcaagccct-attcttatcattcaactttgcaatcaaca 98  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  242045 cataagatcaaaaacaagtcaatccaagcaagccctaattcttatcattcaactttgcaatcaaca 241980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 241832 - 241790
Alignment:
Q  164 aataaaaacataaaaatgatgataatgaaagttctcaaatcct 206  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  241832 aataaaaacataaaaatgatcataatcaaagttctcaaatcct 241790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 52895431 - 52895486
Alignment:
Q  15 ataaaagttaatttatttgcataagctcaaaaacaagtcaatccaagcaagcccta 70  Q
    ||||||||| ||||||||||||||||| ||||  ||| |||||||| |||||||||    
T  52895431 ataaaagtttatttatttgcataagctaaaaattaaggcaatccaaacaagcccta 52895486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 21720949 - 21720916
Alignment:
Q  27 ttatttgcataagctcaaaaacaagtcaatccaa 60  Q
    ||||||||||||||| ||||||||||||||||||    
T  21720949 ttatttgcataagcttaaaaacaagtcaatccaa 21720916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 43079989 - 43080037
Alignment:
Q  12 cacataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 60  Q
    |||||||||| | ||||||||||||||||| ||||| ||| ||||||||    
T  43079989 cacataaaagcttatttatttgcataagctaaaaaataagacaatccaa 43080037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 274 - 391
Target Start/End: Original strand, 10520504 - 10520621
Alignment:
Q  274 ccaccagcaataccttcattaagcctaatagattccggaatctcatcataagccttcaatagcctcgcctcatccggcatatatttcaatatcacatcag 373  Q
    |||||| |||| |||||||||||||| | |   ||||||| |||   ||| |||||||| |  || ||||||||||||||||| ||||| ||||||||||    
T  10520504 ccaccaccaattccttcattaagcctcacactatccggaagctcgctatacgccttcaacaatctggcctcatccggcatatacttcaagatcacatcag 10520603  T
Q  374 ccttatcatcctgataat 391  Q
    ||||||||||||||||||    
T  10520604 ccttatcatcctgataat 10520621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 9130990 - 9130943
Alignment:
Q  13 acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 60  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||    
T  9130990 acataaaagtttatttatttgcataagctcaaaatcaagtcaatccaa 9130943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 34286619 - 34286675
Alignment:
Q  13 acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaagcaagccct 69  Q
    ||||||||| | |||||||| |||||||||||||| |||||||||||| || |||||    
T  34286619 acataaaagcttatttatttacataagctcaaaaataagtcaatccaaacaggccct 34286675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 13265514 - 13265467
Alignment:
Q  13 acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 60  Q
    ||||||||| | |||||||||||||| ||| |||||||||||||||||    
T  13265514 acataaaagcttatttatttgcataaactcgaaaacaagtcaatccaa 13265467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 32213078 - 32213122
Alignment:
Q  13 acataaaagttaatttatttgcataagctcaaaaacaagtcaatc 57  Q
    ||||||||| | ||||||||||||||||| ||||| |||||||||    
T  32213078 acataaaagcttatttatttgcataagcttaaaaataagtcaatc 32213122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 2034285 - 2034332
Alignment:
Q  13 acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 60  Q
    ||||||||| | ||||||||||||||||||||||||||| ||||||||    
T  2034285 acataaaagcttatttatttgcataagctcaaaaacaagccaatccaa 2034332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 10874097 - 10874154
Alignment:
Q  13 acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaagcaagcccta 70  Q
    ||||||||| | ||||||||||||||||| ||||| |||||| ||||| || ||||||    
T  10874097 acataaaagcttatttatttgcataagctaaaaaataagtcattccaaacaggcccta 10874154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 28663458 - 28663411
Alignment:
Q  13 acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 60  Q
    ||||||||| | ||||||||||||||||||||||| ||||||||||||    
T  28663458 acataaaagctcatttatttgcataagctcaaaaataagtcaatccaa 28663411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 36740932 - 36740887
Alignment:
Q  15 ataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 60  Q
    ||||||| | ||||||||||||||||||||||| ||||||||||||    
T  36740932 ataaaagcttatttatttgcataagctcaaaaataagtcaatccaa 36740887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 488440 - 488487
Alignment:
Q  13 acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 60  Q
    ||||||||| | | ||||||||||||||||||||| ||||||||||||    
T  488440 acataaaagcttacttatttgcataagctcaaaaataagtcaatccaa 488487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 7148802 - 7148755
Alignment:
Q  13 acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 60  Q
    ||||||||| | ||||||||||||||||||||||| ||| ||||||||    
T  7148802 acataaaagcttatttatttgcataagctcaaaaataagccaatccaa 7148755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 52274176 - 52274219
Alignment:
Q  13 acataaaagttaatttatttgcataagctcaaaaacaagtcaat 56  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||    
T  52274176 acataaaagtttatttatttgcataagctcaaaaataagccaat 52274219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 60
Target Start/End: Complemental strand, 3564219 - 3564189
Alignment:
Q  30 tttgcataagctcaaaaacaagtcaatccaa 60  Q
    |||||||||||||||||||||||||||||||    
T  3564219 tttgcataagctcaaaaacaagtcaatccaa 3564189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 825700 - 825655
Alignment:
Q  25 atttatttgcataagctcaaaaacaagtcaatccaagcaagcccta 70  Q
    ||||||||||||||||||||||| ||| |||||||| || ||||||    
T  825700 atttatttgcataagctcaaaaagaagccaatccaaacaggcccta 825655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 897000 - 896967
Alignment:
Q  13 acataaaagttaatttatttgcataagctcaaaa 46  Q
    ||||||||||| ||||||||||||||||||||||    
T  897000 acataaaagtttatttatttgcataagctcaaaa 896967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 10046345 - 10046402
Alignment:
Q  13 acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaagcaagcccta 70  Q
    ||||||||| | | |||||| |||||||||||||| |||| |||| ||||||||||||    
T  10046345 acataaaagcttaattatttacataagctcaaaaataagttaatcgaagcaagcccta 10046402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 57
Target Start/End: Complemental strand, 48667739 - 48667710
Alignment:
Q  28 tatttgcataagctcaaaaacaagtcaatc 57  Q
    ||||||||||||||||||||||||||||||    
T  48667739 tatttgcataagctcaaaaacaagtcaatc 48667710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 39932810 - 39932854
Alignment:
Q  13 acataaaagttaatttatttgcataagctcaaaaacaagtcaatc 57  Q
    ||||||||||| ||||||||||||||| | ||||| |||||||||    
T  39932810 acataaaagtttatttatttgcataagtttaaaaataagtcaatc 39932854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 9140703 - 9140656
Alignment:
Q  13 acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 60  Q
    ||||||||||| |||||| |||||||||||||||| ||||||||||||    
T  9140703 acataaaagtttatttatatgcataagctcaaaaataagtcaatccaa 9140656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 18276949 - 18276912
Alignment:
Q  25 atttatttgcataagctcaaaaacaagtcaatccaagc 62  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  18276949 atttatttgcataagctcaaaaataagtcaatccaagc 18276912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 37419947 - 37419900
Alignment:
Q  13 acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 60  Q
    ||||||||| | ||||||||||||||||||||||  ||||||||||||    
T  37419947 acataaaagcttatttatttgcataagctcaaaattaagtcaatccaa 37419900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 47511073 - 47511026
Alignment:
Q  13 acataaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 60  Q
    ||||||||| | ||||||||||||||||||||||| ||| ||||||||    
T  47511073 acataaaagcttatttatttgcataagctcaaaaataagccaatccaa 47511026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 33288155 - 33288199
Alignment:
Q  13 acataaaagttaatttatttgcataagctcaaaaacaagtcaatc 57  Q
    ||||||||| | ||||||||||||||||||||||| | |||||||    
T  33288155 acataaaagcttatttatttgcataagctcaaaaatatgtcaatc 33288199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 38372557 - 38372521
Alignment:
Q  30 tttgcataagctcaaaaacaagtcaatccaagcaagc 66  Q
    |||||||||||||||||| |||||||||||| |||||    
T  38372557 tttgcataagctcaaaaataagtcaatccaaacaagc 38372521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 45267483 - 45267448
Alignment:
Q  25 atttatttgcataagctcaaaaacaagtcaatccaa 60  Q
    ||||||||||||||||||||||| ||||||||||||    
T  45267483 atttatttgcataagctcaaaaataagtcaatccaa 45267448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 28870254 - 28870210
Alignment:
Q  13 acataaaagttaatttatttgcataagctcaaaaacaagtcaatc 57  Q
    ||||||| ||| ||||||||||||||||||||||| ||| |||||    
T  28870254 acataaatgtttatttatttgcataagctcaaaaataagccaatc 28870210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 36178563 - 36178519
Alignment:
Q  16 taaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 60  Q
    |||||| | ||||||||||||||||||||||  ||||||||||||    
T  36178563 taaaagcttatttatttgcataagctcaaaagtaagtcaatccaa 36178519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 28625507 - 28625463
Alignment:
Q  16 taaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 60  Q
    |||||| | ||||||||||||||||| ||||| ||||||||||||    
T  28625507 taaaagcttatttatttgcataagctaaaaaataagtcaatccaa 28625463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 35083273 - 35083241
Alignment:
Q  15 ataaaagttaatttatttgcataagctcaaaaa 47  Q
    ||||||||| |||||||||||||||||||||||    
T  35083273 ataaaagtttatttatttgcataagctcaaaaa 35083241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 42706823 - 42706779
Alignment:
Q  16 taaaagttaatttatttgcataagctcaaaaacaagtcaatccaa 60  Q
    |||||| | ||||||||||||||||||||||| ||| ||||||||    
T  42706823 taaaagcttatttatttgcataagctcaaaaataagccaatccaa 42706779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University