View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12955_low_3 (Length: 386)
Name: NF12955_low_3
Description: NF12955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12955_low_3 |
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| [»] scaffold0697 (1 HSPs) |
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Alignment Details
Target: scaffold0697 (Bit Score: 177; Significance: 3e-95; HSPs: 1)
Name: scaffold0697
Description:
Target: scaffold0697; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 43 - 291
Target Start/End: Complemental strand, 3454 - 3206
Alignment:
| Q |
43 |
agtttgttcttgtggattttgcaatcttctttaatagtgaagatggggacggaactgattctaagtttatgtgtaacattagtggtggctggtgtaaaat |
142 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||| |||||||||||||||||||| |
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| T |
3454 |
agtttattcttgtggattttgcaatcttctttaatagtgaagatggggacagaactgattctaagtgtatgtttaacatcagtggtggctggtgtaaaat |
3355 |
T |
|
| Q |
143 |
ttatgcaaagaattatctggtttataatttttgttgtcactcttttgctgaattggaaattggatcagagtagtttgtgtaggttctgagttgagtatag |
242 |
Q |
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||||||||||||||| ||||||||||||||||||||| ||||||| || ||| |||||||||||||||||| ||||||| ||||||||||||| || || |
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| T |
3354 |
ttatgcaaagaattacctggtttataatttttgttgttactctttggcagaagtggaaattggatcagagtggtttgtgcaggttctgagttggctaaag |
3255 |
T |
|
| Q |
243 |
gaaatttgtgtatgtgaaggctttctggtttcatttcagttatgtacca |
291 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
3254 |
gaaatttgtgtatgtgaaggctttttggtttcatttatgttatgtacca |
3206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 177; Significance: 3e-95; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 43 - 291
Target Start/End: Complemental strand, 21532496 - 21532248
Alignment:
| Q |
43 |
agtttgttcttgtggattttgcaatcttctttaatagtgaagatggggacggaactgattctaagtttatgtgtaacattagtggtggctggtgtaaaat |
142 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||| |||||||||||||||||||| |
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| T |
21532496 |
agtttattcttgtggattttgcaatcttctttaatagtgaagatggggacagaactgattctaagtgtatgtttaacatcagtggtggctggtgtaaaat |
21532397 |
T |
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| Q |
143 |
ttatgcaaagaattatctggtttataatttttgttgtcactcttttgctgaattggaaattggatcagagtagtttgtgtaggttctgagttgagtatag |
242 |
Q |
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||||||||||||||| ||||||||||||||||||||| ||||||| || ||| |||||||||||||||||| ||||||| ||||||||||||| || || |
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| T |
21532396 |
ttatgcaaagaattacctggtttataatttttgttgttactctttggcagaagtggaaattggatcagagtggtttgtgcaggttctgagttggctaaag |
21532297 |
T |
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| Q |
243 |
gaaatttgtgtatgtgaaggctttctggtttcatttcagttatgtacca |
291 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
21532296 |
gaaatttgtgtatgtgaaggctttttggtttcatttatgttatgtacca |
21532248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 127 - 291
Target Start/End: Original strand, 22905679 - 22905843
Alignment:
| Q |
127 |
gtggctggtgtaaaatttatgcaaagaattatctggtttataatttttgttgtcactcttttgctgaattggaaattggatcagagtagtttgtgtaggt |
226 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||| || |||| |
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| T |
22905679 |
gtggctggtgtaaaatttatgcaaagaattacctggtttataatttttgttgtcactctttagcagaattggaaattggatcagagtggtttatgcaggt |
22905778 |
T |
|
| Q |
227 |
tctgagttgagtataggaaatttgtgtatgtgaaggctttctggtttcatttcagttatgtacca |
291 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
22905779 |
tctgagttggctataggaaatttgtgtatgtgaaggctttctggtttcatttcagctatgtacca |
22905843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 43 - 137
Target Start/End: Original strand, 22905570 - 22905664
Alignment:
| Q |
43 |
agtttgttcttgtggattttgcaatcttctttaatagtgaagatggggacggaactgattctaagtttatgtgtaacattagtggtggctggtgt |
137 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
22905570 |
agtttgttcttatggattttgcaatcttctttaatagtgaagatggggagagaactgattctatgtttatgtgtaacatcagtggtggctggtgt |
22905664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 8e-74; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 127 - 291
Target Start/End: Complemental strand, 32713999 - 32713835
Alignment:
| Q |
127 |
gtggctggtgtaaaatttatgcaaagaattatctggtttataatttttgttgtcactcttttgctgaattggaaattggatcagagtagtttgtgtaggt |
226 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || || ||||||||||||||||||| ||||||| |||| |
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| T |
32713999 |
gtggctggtgtaaaatttatgcaaagaattacctggtttataatttttgttgtcactctttagcagagttggaaattggatcagagtggtttgtgcaggt |
32713900 |
T |
|
| Q |
227 |
tctgagttgagtataggaaatttgtgtatgtgaaggctttctggtttcatttcagttatgtacca |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32713899 |
tctgagttgagtataggaaatttgtgtatgtgaaggctttctggtttcatttcagttatgtacca |
32713835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 127 - 291
Target Start/End: Original strand, 10641608 - 10641772
Alignment:
| Q |
127 |
gtggctggtgtaaaatttatgcaaagaattatctggtttataatttttgttgtcactcttttgctgaattggaaattggatcagagtagtttgtgtaggt |
226 |
Q |
| |
|
|||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||| |||| |
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| T |
10641608 |
gtggctggtgtataatttatgcaaagaattacctagtttataatttttgttgtcactctttagtagaattggaaattggatcagagtggtttgtgcaggt |
10641707 |
T |
|
| Q |
227 |
tctgagttgagtataggaaatttgtgtatgtgaaggctttctggtttcatttcagttatgtacca |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10641708 |
tctgagttgagtataggaaatttgtgtatgtgaaggctttctggtttcatttcagttatgtacca |
10641772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 43 - 137
Target Start/End: Original strand, 10641499 - 10641593
Alignment:
| Q |
43 |
agtttgttcttgtggattttgcaatcttctttaatagtgaagatggggacggaactgattctaagtttatgtgtaacattagtggtggctggtgt |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10641499 |
agtttgttcttgtggattttgcaatcttctttaatagtgaagatggggacagaactgattctaagtttatgtgtaacatcagtggtggctggtgt |
10641593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 32714108 - 32714014
Alignment:
| Q |
43 |
agtttgttcttgtggattttgcaatcttctttaatagtgaagatggggacggaactgattctaagtttatgtgtaacattagtggtggctggtgt |
137 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||| |
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| T |
32714108 |
agtttgttcttgtggattttgcaatcttctttaatagtgaagatggggacatagttgattctaagtttatgtgtaacatccgtggtggctggtgt |
32714014 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 43 - 137
Target Start/End: Original strand, 26665301 - 26665395
Alignment:
| Q |
43 |
agtttgttcttgtggattttgcaatcttctttaatagtgaagatggggacggaactgattctaagtttatgtgtaacattagtggtggctggtgt |
137 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||| ||||||| |
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| T |
26665301 |
agtttgttcttgtggactttgaaatcttctttaatagtgaagatggggacaaaactgattataagtttatgtgtaacatcagtggtgtctggtgt |
26665395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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