View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12955_low_4 (Length: 380)
Name: NF12955_low_4
Description: NF12955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12955_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 62 - 380
Target Start/End: Complemental strand, 53616058 - 53615740
Alignment:
| Q |
62 |
ccagacacaaacagagaaatggtgtctcccaaaaacataggaaaatatagacttggcaggacaataggagaaggtacattctctaaggtaaagattgctt |
161 |
Q |
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| T |
53616058 |
ccagacacaaacagagaaatggtgtctcccaaaaacataggaaaatatagacttggcaggacaataggagaaggtacattctctaaggtaaagattgctt |
53615959 |
T |
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| Q |
162 |
taaatagcaacaatggtgagaaggtagcaatcaaggtcattgacaaacaaatggtcttgaaaaacaatctaaaacatcaggtaaacctcattttggtcct |
261 |
Q |
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| T |
53615958 |
taaatagcaacaatggtgagaaggtagcaatcaaggtcattgacaaacaaatggtcttgaaaaacaatctaaaacatcaggtaaacctcattttggtcct |
53615859 |
T |
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| Q |
262 |
tctttttcccccttcaaaaattaggtattttacttcaactattaaggccaaaacatgtttcaggtacaaagtgagattagaacaatgaaacttctacatc |
361 |
Q |
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| T |
53615858 |
tctttttcccccttcaaaaagtaggtattttacttcaaatattaaggccaaaacatgtttcaggtacaaagtgagattagaacaatgaaacttctacatc |
53615759 |
T |
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| Q |
362 |
atccaaatatagttagaat |
380 |
Q |
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| T |
53615758 |
atccaaatatagttagaat |
53615740 |
T |
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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 17923574 - 17923526
Alignment:
| Q |
301 |
tattaaggccaaaacatgtttcaggtacaaagtgagattagaacaatga |
349 |
Q |
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| T |
17923574 |
tattatggccaaaccatgtttcaggtacaaagtgagattagaacaatga |
17923526 |
T |
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