View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12956_high_3 (Length: 561)
Name: NF12956_high_3
Description: NF12956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12956_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 13 - 548
Target Start/End: Original strand, 15406628 - 15407168
Alignment:
| Q |
13 |
aaaatagccaatgacccttttcaatacacaatttcgatggactagtttgacttctgnnnnnnnnta---ttcaa--caaagttatttcgattaggattgc |
107 |
Q |
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| T |
15406628 |
aaaatagccaatgacccttttcaatacacaatttcgacggactaatttgacttctgaaaagaaaaaaaattcaatacaaagttatttcgattaaaattgc |
15406727 |
T |
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| Q |
108 |
agttgcagttacgctgtgaaccttatattaaaaataaaatgtggacaaattataaagacttctaaaaccgttgaaatttggcctaactcattcttgcaaa |
207 |
Q |
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| T |
15406728 |
agttgcagttacgctgtgaaccttatattaaaaataaaatgtggacaaattataaagacttctaaaaccgttgaaatttggcctaactcattcttgcaaa |
15406827 |
T |
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| Q |
208 |
accgaactactgttgcatactacaatttagaactatgcaaaggaagatatataccttgattagtgatgagcctataagcatgaccaagattaagagtttc |
307 |
Q |
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| T |
15406828 |
accgaactactgttgcatactacaatttagaactatgcaaaggaagatatataccttgattagtgatgagcctataagcatgaccaagattaagagtttc |
15406927 |
T |
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| Q |
308 |
attaggcctaagcaccttaacacgagcaagcctaactgtcttttgttcttgattctgttcttgaggttgaggaggtaatggcataatcaatgaaacatag |
407 |
Q |
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| T |
15406928 |
attaggcctaagcaacttaacacgagtaaacctaactgtcttttgttcttgattctgttcttgaggttgaggaggtaatggcataatcaatgaaacatag |
15407027 |
T |
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| Q |
408 |
tgaccaggattggttttcataacttcactagcagttactggccaatacaatctatctatcttcccacatggatgttggatcacaagaactgcagcatcaa |
507 |
Q |
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| T |
15407028 |
tgaccaggattggttttcataacttcactagcagttactggccaatacaatctatctatcttcccacatggatgttggatcacaagaactgcagcatcaa |
15407127 |
T |
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| Q |
508 |
cagcttgacaatttcccatagaaaagaaagatgaagaaaat |
548 |
Q |
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| T |
15407128 |
cagcttgacaatttcccatagaaaagaaagatgaagaaaat |
15407168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 401 - 526
Target Start/End: Complemental strand, 44080923 - 44080798
Alignment:
| Q |
401 |
aacatagtgaccaggattggttttcataacttcactagcagttactggccaatacaatctatctatcttcccacatggatgttggatcacaagaactgca |
500 |
Q |
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| T |
44080923 |
aacatagtgatcagggtgtgtcttcatcacttcactagcagtgactggccaatacaacctttcttctttaccatttggttgttgtattacaagagttgct |
44080824 |
T |
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| Q |
501 |
gcatcaacagcttgacaatttcccat |
526 |
Q |
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| T |
44080823 |
gtatcaatagcttgacaatttcccat |
44080798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 333
Target Start/End: Original strand, 26460964 - 26461038
Alignment:
| Q |
259 |
taccttgattagtgatgagcctataagcatgaccaagattaagagtttcattaggcctaagcaccttaacacgag |
333 |
Q |
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| T |
26460964 |
taccttgagttgtgatgagcctataagcatgtcctaaagtgagagtgtcatcaggcttaagcaacttaacacgag |
26461038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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